2L9W,5VSU,6ASO,4N0T


Conserved Protein Domain Family
RRM4_Prp24

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cd12299: RRM4_Prp24 
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RNA recognition motif 4 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins
This subfamily corresponds to the RRM4 of Prp24, also termed U4/U6 snRNA-associated-splicing factor PRP24 (U4/U6 snRNP), an RNA-binding protein with four well conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It facilitates U6 RNA base-pairing with U4 RNA during spliceosome assembly. Prp24 specifically binds free U6 RNA primarily with RRMs 1 and 2 and facilitates pairing of U6 RNA bases with U4 RNA bases. Additionally, it may also be involved in dissociation of the U4/U6 complex during spliceosome activation.
Statistics
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PSSM-Id: 409740
Aligned: 22 rows
Threshold Bit Score: 79.6004
Created: 11-Jan-2012
Updated: 17-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2L9W_A         22 TLICLFPLSDKVSpSLICQFLQEEIhinekdIRKILLVSDFNGAIIIFRDskFAAKMLMILNGSQFq-GKVIRSGT 96   baker's yeast
CCE83383      825 RSISVFNVSDTINsDQIANHFNTVIg----pVTKVEIFPEHNAAIVEFQSpmHAGKVVLSPDAAILd-GKSLEFGS 895  Pichia farinosa C...
XP_001384763  734 RTVGVTNVDNTLTaEQVKLFFSTNGg----vVSKVEIFPEHAVAMVEFEKasDAGNVTMSLRTKQLg-NREIVLTS 804  Scheffersomyces s...
Q9USY2        874 KSLGVTNVDGTVNeARLRSLFESYGk-----LYRVVLHPEHEGAVVEFLDihDAGKASLALEGHEIg-GRLLHITT 943  Schizosaccharomyc...
CAZ86414      968 KTLGIMNLSDTVNdTKIRHMFEKYGp-----LRKVALRPDHQGAIVEYESvtDAGKATLALDGLELa-GRKIKIGG 1037 Tuber melanosporu...
CAG89018      836 STISIFNVSDTINrDQMTAFLTKRVg----pVRHVEVFPNQEAALAEFEVpsDAGKASLILTSEEFe-GKLLNVGS 906  Debaryomyces hans...
EHY58819     1127 RTVAICEVPDTVNeSRIKAVAEKIGp-----IRKVLLKTNHQGALVEFETipDAGRGMIELDGYEIspGRRIRVTT 1197 Exophiala dermati...
EGW34457      798 STIGLINVDTTLKpYDIKAYFEKFGa-----VEKSMVLPDSASALVEFASptTAGTVSMSGDKIILg-QTEATITE 867  Spathaspora passa...
XP_001875911  461 RSVRVRNLPPATQeGLLQQVLEKIAp-----VRRVEVFVDKQEAVVELETpaEAGKLLLRTEAVVFn-GHTLELTE 530  Laccaria bicolor ...
EGV60824      806 SSLALYQVPKTATrEQLSLYFKQTTgv---kPTRITIFPDKEAAAVQFAStsESGKAGLAIQSHQFn-STFLKADS 877  Candida tenuis AT...
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