2GHP,4N0T,5VSU,6ASO


Conserved Protein Domain Family
RRM3_Prp24

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cd12298: RRM3_Prp24 
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RNA recognition motif 3 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins
This subfamily corresponds to the RRM3 of Prp24, also termed U4/U6 snRNA-associated-splicing factor PRP24 (U4/U6 snRNP), an RNA-binding protein with four well conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It facilitates U6 RNA base-pairing with U4 RNA during spliceosome assembly. Prp24 specifically binds free U6 RNA primarily with RRMs 1 and 2 and facilitates pairing of U6 RNA bases with U4 RNA bases. Additionally, it may also be involved in dissociation of the U4/U6 complex during spliceosome activation.
Statistics
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PSSM-Id: 409739
Aligned: 14 rows
Threshold Bit Score: 95.7909
Created: 14-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2GHP_A       211 REIXIRNLStellDENLLRESFEgFGSIEKINIPagqke------------hsfnnCCAFXVFENKDSAERALQxNRSLL 278  baker's yeast
6ASO_A       184 REIMIRNLStellDENLLRESFEgFGSIEKINIPagqke------------hsfnnCCAFMVFENKDSAERALQmNRSLL 251  baker's yeast
AAS52966     201 REVLIRGLDfikvTIEKLQGLVEpFGEVEKLIMPpssdsa----------dgrhnrGFAFVTYKDAAAAEAALAlHNTVF 270  Ashbya gossypi...
CAG59824     193 REIIIRNLPktmlVKDTLLDIFKkYGAIDDLRIPkkqlem----------lsdlnhGCAFVVYTNPEDAKSALEmNNHVI 262  Candida glabrata
XP_001384763 628 SQIRVKNIDym-lDIEAIKGMFVeCGTVTSVVIPkfqrnn----------fnqknnGLAYVTFESNHEAQKAVQmDGKII 696  Scheffersomyce...
CAG89018     732 REIYIQNLNfkttTESDLESLFQtIGTIDSVKVPlnekmkn---------qgninnGYAFVVFKSEVAAKNALQlNGTTL 802  Debaryomyces h...
CAR21973     210 RQVLVRNLNyn-tNEAALSAIFAkFGHVEQINLPrtrenkhgeidtkgetkerlneGFAFITFSDASCARSSLSlNGTEI 288  Lachancea ther...
XP_002619506  73 RQVYVHNLNfketDESHLHAFFSkFGDVESVKMPlsaknrd---------qglqnnGFAFVTFITEAGANEAIKlGGADL 143  Clavispora lus...
EGW34457     706 RKIRVSNLSfe-lGEDQIKDIFVkCGEIDSIVIPrknkk-------------ysneGVAIIVFEGIESVDRALElNETEI 771  Spathaspora pa...
CAY67124     671 RELFIRNLDfk-lTKEDLVPLFEkYGQIDKIYVPcdset-------------kknnGFAFITFKEKDAAESALElNSVPL 736  Komagataella p...
2GHP_A       279 GNREISVSL 287  baker's yeast
6ASO_A       252 GNREISVSL 260  baker's yeast
AAS52966     271 EDRRLTVAM 279  Ashbya gossypii ATCC 10895
CAG59824     263 DDIKISVNL 271  Candida glabrata
XP_001384763 697 GGRPISVAL 705  Scheffersomyces stipitis CBS 6054
CAG89018     803 HDRKISVSQ 811  Debaryomyces hansenii CBS767
CAR21973     289 DNRILDVTL 297  Lachancea thermotolerans CBS 6340
XP_002619506 144 DNRRIEISA 152  Clavispora lusitaniae ATCC 42720
EGW34457     772 SGRKLHVER 780  Spathaspora passalidarum NRRL Y-27907
CAY67124     737 LDRPLDVSL 745  Komagataella pastoris GS115
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