2GO9,2GHP,5VSU,4N0T,6ASO


Conserved Protein Domain Family
RRM1_Prp24

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cd12296: RRM1_Prp24 
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RNA recognition motif 1 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins
This subfamily corresponds to the RRM1 of Prp24, also termed U4/U6 snRNA-associated-splicing factor PRP24 (U4/U6 snRNP), an RNA-binding protein with four well conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It facilitates U6 RNA base-pairing with U4 RNA during spliceosome assembly. Prp24 specifically binds free U6 RNA primarily with RRMs 1 and 2 and facilitates pairing of U6 RNA bases with U4 RNA bases. Additionally, it may also be involved in dissociation of the U4/U6 complex during spliceosome activation.
Statistics
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PSSM-Id: 409737
Aligned: 26 rows
Threshold Bit Score: 83.0866
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2GO9_A      5 TTVLVKNLPksyNQNKVYKYFkhCGPIIHVDVAdslk------knfRFARIEFARYDGALAAITKthKVVGQNEIIVSH 77   baker's yeast
CCE83383  552 CSVKLSHLPddiTERRVRDFLkdCGDPKDVKIFesg--------gdCNAIIEFSSEQEVFSSMTKnfKKLDGREIEVTR 622  Pichia farinosa CB...
EGV60824  540 LSVKVTGLPanvPECTVEQFFqdCGVVRNVVVFhsg--------egCEAVVEFEDNQAIFAALTKshKKLENQEVLVKR 610  Candida tenuis ATC...
CAG59824   22 CTVLVENVPksyNQGKIKKFFkdCGDVLQVNSYeswre----gnrcQMARVEFADEDGARSALTRtlRNMGSNTIEVNE 96   Candida glabrata C...
CAG77686  491 LTVIMAKLPegtTEEQINTFFseCGEPRNSILNl------------PFAVIEFSSHDEKLAALTRdhKKLGDQEVRVTD 557  Yarrowia lipolytic...
EDP43117  684 SSVMVSGLPpntTEAEVRTFFrdCGIIFDMVGPkqiattssdtqpmSAVLVEFTDREGASAARTRdmKRIGENEVRVSL 762  Malassezia globosa...
EAA29316  627 TSVFVHNLPegiTQTKLRQFFreYGHINNIDLQkse-------gtpAVALIEFKSPEDARTALLRdgKRLGESVIQVSP 698  Neurospora crassa ...
2GHP_A     42 TTVLVKNLPksyNQNKVYKYFkhCGPIIHVDVAdslk------knfRFARIEFARYDGALAAITKthKVVGQNEIIVSH 114  baker's yeast
5VSU_A     41 TTVLVKNLPksyNQNKVYKYFkhCGPIIHVDVAdslk------knfRFARIEFARYDGALAAITKthKVVGQNEIIVSH 113  Saccharomyces cere...
4N0T_A      9 TTVLVKNLPksyNQNKVYKYFkhCGPIIHVDVAdslk------knfRFARIEFARYDGALAAITKthKVVGQNEIIVSH 81   Saccharomyces cere...
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