3S6E,4OZ0,4J5O,2LQ5,4RU2


Conserved Protein Domain Family
RRM3_RBM39_like

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cd12285: RRM3_RBM39_like 
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RNA recognition motif 3 (RRM3) found in vertebrate RNA-binding protein 39 (RBM39) and similar proteins
This subfamily corresponds to the RRM3 of RBM39, also termed hepatocellular carcinoma protein 1, or RNA-binding region-containing protein 2, or splicing factor HCC1, ia nuclear autoantigen that contains an N-terminal arginine/serine rich (RS) motif and three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). An octapeptide sequence called the RS-ERK motif is repeated six times in the RS region of RBM39. Based on the specific domain composition, RBM39 has been classified into a family of non-snRNP (small nuclear ribonucleoprotein) splicing factors that are usually not complexed to snRNAs.
Statistics
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PSSM-Id: 409727
Aligned: 56 rows
Threshold Bit Score: 81.8254
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3S6E_A          7 TQCFQLSNXFNPQTEEEv-gWDTEIKDDVIEECN--KHGGVIHIYVDKns-aQGNVYVKCPSiAAAIAAVNALHGRWFaG 82   house mouse
O43120        248 NKIVVLKHIFTLEELDKtpeLLIDLKDDITEEAE--KCGRVTNVVLYDke-pDGVVTVRFSNnEEAEACVRLMQGRYFdG 324  fission yeast
EGU10943      280 RGVVVLEGMFTLQELEDdptLLLDLKEDVREECE--TLGEVTNVTLYDke-dKGVMTVRFKEeLAAQACIAKMNGRFFgG 356  Rhodotorula g...
EAA34822      326 DKVVILRHMFTLEELNEdpaALLEIKDDIREECA--KLGPVTNVVLFDee-eEGIVSVKFATvEAAEACVHLMHGRAFdG 402  Neurospora cr...
EER30974      210 FPVVIIENMFRNEELTSdkyLKTDIIEDINEECVkiGIPKVLDIQFESe---KGNVTVKFDTlEHAKICIQKFNNRYYdG 286  Candida tropi...
XP_003669137  274 DRTIVLNNVLDVGAKYTe-gELDEIKEDIVDECS--TVKGIERFELDEs---NGRALVVYEDvPSALNCRSLLDGRFFdG 347  Naumovozyma d...
XP_003673922  180 EKTVILANVLGVHQKYSs-eEIDDITDDILGGCS--SIGTVQSLKIDIn---SDEAKVVFATvEDAIKCKLQMNGRFFdG 253  Naumovozyma c...
XP_002551536  201 SRTVVLANVLDLYANLAp-qQIAEVAADLKEGCE--AIGSVSSFEFDEv---LGQAKVEYKSsEIAQKCCQLMNGRYFdG 274  Lachancea the...
CBJ26172      101 HPVVVLRSVYTREESEAdphFFDDLEADMLMECV--KFGTVISVATPEepgyFGCVVITFKTsDGANACAEAMHGRWFdQ 178  Ectocarpus si...
EGP91993      193 EKLVIISNIFTLAQLEEdeeLADDIHRDVLEDAE--TIGPVKNVVVYDle-pRGICVIRFRDvESAQKCADAWDGRRYnG 269  Mycosphaerell...
3S6E_A         83 KXITAAYVP 91   house mouse
O43120        325 RVVEASIYD 333  fission yeast
EGU10943      357 RQISAFPMD 365  Rhodotorula glutinis ATCC 204091
EAA34822      403 RIVEAFFAT 411  Neurospora crassa OR74A
EER30974      287 LQLNVKLKT 295  Candida tropicalis MYA-3404
XP_003669137  348 REIIARTLT 356  Naumovozyma dairenensis CBS 421
XP_003673922  254 RELVAYMLS 262  Naumovozyma castellii CBS 4309
XP_002551536  275 RKLVAYNLE 283  Lachancea thermotolerans CBS 6340
CBJ26172      179 RQIEALVTG 187  Ectocarpus siliculosus
EGP91993      270 RAVRAGVPT 278  Mycosphaerella graminicola IPO323
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