Conserved Protein Domain Family
RRM1_TatSF1_like

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cd12281: RRM1_TatSF1_like 
RNA recognition motif 1 (RRM1) found in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins
This subfamily corresponds to the RRM1 of Tat-SF1 and CUS2. Tat-SF1 is the cofactor for stimulation of transcriptional elongation by human immunodeficiency virus-type 1 (HIV-1) Tat. It is a substrate of an associated cellular kinase. Tat-SF1 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a highly acidic carboxyl-terminal half. The family also includes CUS2, a yeast homolog of human Tat-SF1. CUS2 interacts with U2 RNA in splicing extracts and functions as a splicing factor that aids assembly of the splicing-competent U2 snRNP in vivo. CUS2 also associates with PRP11 that is a subunit of the conserved splicing factor SF3a. Like Tat-SF1, CUS2 contains two RRMs as well.
Statistics
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PSSM-Id: 409723
Aligned: 33 rows
Threshold Bit Score: 116.877
Created: 22-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O43719        132 NTNVYVSGLPPDi---tVDEFIQLMSKFGiimrd-pqteEFKVKLYKDNQgn-----lKGDGLCCYLKRESVELALKLLD 202  human
XP_002951448  341 NTNVYVTGLPLDv---tVQEINEVFSKCGivkv--dekgHPRIKLYKWVNgdkatgllKGDALVSYLKEPSVELACRFLH 415  Volvox carter...
EEY57332      200 NTWVYVNGLPLDv---tVQEVHDHFAKCGviqpd-iatgEPRIKLYQNKEsg----glNGDGSVCYMKEASVELAVQLLD 271  Phytophthora ...
O43120        109 NKAVYIQGLPLDv---tVDEIEEVFKKCGviakn-idngTPRIKIYRTEDgt-----pKGDALIVFFRSESVELAEQLFD 179  fission yeast
XP_002808796  205 NSSIYITGLPNDv---vKEEIYEVFKKAGiikid-ternEPQIKIYYDDNnn-----iKGDALVTYVYTQSVDMAIKYFD 275  Plasmodium fa...
XP_002682408  162 NTSIYISGLPLDekkvhNQLLIDEFSKCGiiktd-pfteQPKVKLYRNDDgs-----lKGDARVTFLKEESIDLAITLFD 235  Naegleria gru...
P53830         44 NTSIYISGLPTDkt--tKEGLTEQFCKYGmirt--nrdgEPLCKLYVNDKga-----fKGDALITYSKEESVTLAIEMMN 114  Saccharomyces...
EAA34822      128 NTAVYVTGLPLDa---tADEVAELFSRKCgviaeeidsgRPRIKMYTDANgn-----fKGDALIVFFKPQSVEMAIMLLD 199  Neurospora cr...
EGU10943      126 NTAVFVSSLPLSt---tVDQLVSTFSKAGlile--dvegNPKVKLYKDENgr-----fKGEALVVYLQEASVELACRLFD 195  Rhodotorula g...
CAG77631       99 QKAIYVSGLPSTa---tNDELVDIFQKYGvlaed-vytgKKKARVYVDEQgk-----gKGDGLVVFFKPESVKLAVDMLH 169  Yarrowia lipo...
O43719        203 ede--------------irGYKLHVEVAKFQLKG 222  human
XP_002951448  416 qsqfrswrvslelcvrpgsGPLMTVEPAKFEMKG 449  Volvox carteri f. nagariensis
EEY57332      272 ksq-------------irpDWPIDVSPAVFQQKE 292  Phytophthora infestans T30-4
O43120        180 dtef-----------rygsGQKMRVQKANIDYKK 202  fission yeast
XP_002808796  276 nfl-------------frqNCIIHVEKAQFNNKK 296  Plasmodium falciparum 3D7
XP_002682408  236 gasl------------fgdGSTITVTRAEFTKPE 257  Naegleria gruberi strain NEG-M
P53830        115 esi--------------flGKQIRVERAQFQNKE 134  Saccharomyces cerevisiae S288c
EAA34822      200 dtdfrf--------epapdGSRMRVQAADMSYKK 225  Neurospora crassa OR74A
EGU10943      196 etelv----------lgsgDKVISVKAAEWDNSK 219  Rhodotorula glutinis ATCC 204091
CAG77631      170 nqpvy----------vgdtMVTLNVQPAVFDKEK 193  Yarrowia lipolytica CLIB122
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