Conserved Protein Domain Family
RRM1_PHIP1

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cd12271: RRM1_PHIP1 
RNA recognition motif 1 (RRM1) found in Arabidopsis thaliana phragmoplastin interacting protein 1 (PHIP1) and similar proteins
This subfamily corresponds to the RRM1 of PHIP1. A. thaliana PHIP1 and its homologs represent a novel class of plant-specific RNA-binding proteins that may play a unique role in the polarized mRNA transport to the vicinity of the cell plate. The family members consist of multiple functional domains, including a lysine-rich domain (KRD domain) that contains three nuclear localization motifs (KKKR/NK), two RNA recognition motifs (RRMs), and three CCHC-type zinc fingers. PHIP1 is a peripheral membrane protein and is localized at the cell plate during cytokinesis in plants. In addition to phragmoplastin, PHIP1 interacts with two Arabidopsis small GTP-binding proteins, Rop1 and Ran2. However, PHIP1 interacted only with the GTP-bound form of Rop1 but not the GDP-bound form. It also binds specifically to Ran2 mRNA.
Statistics
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PSSM-Id: 409714
Aligned: 8 rows
Threshold Bit Score: 104.33
Created: 20-Jan-2012
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ABK24023      78 VYVGGIPYysNEDDIRSFFegcg--tvtEVDCMTFPDSGk-FRGIALISFKtkAAATRALAldg---admGGRFLKIQ 149 Sitka spruce
EEH56641     254 VYVGGVPFykTEDEIRAAFddeg-lpteAIDCMTFPDSGr-FRGIAIITFAtrEAAKGALAwng---emwDEKFLTVK 326 Micromonas pusill...
EGB08794     120 AYVGGLPYssTEASVSSYFanac-gevrRVDLKDFDDTPgkFCGIAFVTFGdeDALQRALNldgsayeddERCRLKVR 196 Aureococcus anoph...
NP_191094    163 LYVGGIPYqsTEDEIRSYFrscg--viiKVDCKMRPEDGa-FSGIAFITFDteDGAKRALAfdr---aamGDRYLTIQ 234 thale cress
EIE27417     108 VFVGGMPFgyEESDVLDYWsycg--eieSLDLMRFPDTGr-FKGIAFITFKteGGYKAALEcdg---mtiDTVQIKVE 179 Coccomyxa sp. C-169
XP_001698453 159 VWVTGIPHewDRAAILEYWgycgpleeeALHLLTFKDSGn-FNGTAFITFKtqEGYEAALAcng---emlEGRPLRVE 232 Chlamydomonas rei...
EAY88330      75 VVASGLPYttTEAEIRELFerfg--plrSLQLSRFPDSGn-FRGLAFVSFEsnEVAMKSLEldg---fkiGNRFMRVE 146 Indian rice
EEY66531      64 VYVEGIPYkaSEGDIVTHFsscg--tvrEVRMPRYQDSGk-PRGYAHVVFDdeAALEKALEldg---qylFNRYLSIR 135 Phytophthora infe...
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