4E8U


Conserved Protein Domain Family
RRM_like_XS
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cd12266: RRM_like_XS 
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RNA recognition motif (RRM)-like XS domain found in plants
This XS (named after rice gene X and SGS3) domain is a single-stranded RNA-binding domain (RBD) and possesses a unique version of a RNA recognition motif (RRM) fold. It is conserved in a family of plant proteins including gene X and SGS3. Although its function is still unknown, the plant SGS3 proteins are thought to be involved in post-transcriptional gene silencing (PTGS) pathways. In addition, they contain a conserved aspartate residue that may be functionally important.
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Statistics
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PSSM-Id: 409710
Aligned: 14 rows
Threshold Bit Score: 129.014
Created: 22-Dec-2011
Updated: 25-Oct-2021
Structure
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Program:
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
4E8U_A         9 LVYPWKGIVVNIpttkaqd--grsagesGSKLRDEYILRGFNPt--RVRPLWnyl-ghsGTAIVEFNKDWnGLHNGLLFD 83  thale cress
Q9LDX1       301 IVWPPMVIIMNTrldkdd----ndkwlgMGNQELLEYFDKYEAl--RARHSYgpq-ghrGMSVLMFESSAtGYLEAERLH 373 thale cress
Q3T7E4        37 FVWPWMGVLVNVptewkd-----grqigESGNRLKEQLSHFCPl--RVIPLWtfr-ghtGNAIVEFGKDWnGFRNARTFE 108 Zea luxurians
Q9SAI1       118 YVWPWMGIVINPvrrtd------nknvlLDSAYWLKKLARFNPl--EVKTLWldq-esvVAVIPQFNSGWsGFKSVTELE 188 thale cress
Q9M150        32 YVWPWVGLVANVpteveps--grrvgksGSTLRDEFTLKGFNPt--RVKPIWntk-ghtGFALVEFAKDFkGFESAMQFE 106 thale cress
Q9LMH6       219 YVHPWKGILANMkrtfnek---trkyagESGSKIREDLIKKGFnphKVTPLWngrlgftGFAIVDFGKEWeGFRNATMFD 295 thale cress
ABK24910     173 IVWPPIVIVENTgfklqd----nqqssgMGNKELLEAFKAYKPt--KAKQAYgpk-ghrGRSLLIFEESAvGYLEADRLQ 245 Sitka spruce
Q9LUV5        56 IIWPPHVIVQNTstgkgk----egrmegFGNKTMDNRIRELGLtggKSKSLYgre-ghlGITLFKFAGDDsGLRDAMRMA 130 thale cress
XP_002979112  14 IPWPPVVVIENVattydrelrkhrgmenREIRAAIEEVIKVEDr--RLIPLYnye-gqtSRAFLVFPSTEiGYENAVRVH 90  Selaginella moe...
XP_019578076  16 IVWPPMVIIMNTrldkdd----ndkwlgMGNQELMEYFNEYPAi--RARHSYgpq-ghrGMSVLIFESSAtGYFEAERLH 88  Chinese rufous ...

4E8U_A        84 KAYTVDghgkkdw----------------------lkkdgpKLGLYGWIARADDY 116 thale cress
Q9LDX1       374 RELAEMgldriawgq------------------krsmfsggVRQLYGFLATKQDL 410 thale cress
Q3T7E4       109 GHFAAGgfgkkdw----------------------igkknqGSELYGWLARAEDY 141 Zea luxurians
Q9SAI1       189 KEYEIRgcgrkdw---------------------idkrgdwRSKAYGWCARADDY 222 thale cress
Q9M150       107 KSFDLDrhgkrdw---------------------kkghrlrDDKLYGWLAREDDY 140 thale cress
Q9LMH6       296 KHFEVSqcgkrdh----------------------dltrdpGDKLYGWVAKQDDY 328 thale cress
ABK24910     246 KDFLKEgrgradwdrr----------------gtlihptgaKRVLYGYMANKEDM 284 Sitka spruce
Q9LUV5       131 EYFEKInrgrkswgrvqpltpskddeknpglvevdgrtgekKRIFYGYLATVTDL 185 thale cress
XP_002979112  91 DAFAPRres------------------------------rrNGQLYGYLATPEDM 115 Selaginella moellendorffii
XP_019578076  89 KDLAEQgldrnawdr------------------rrnlftggVRQLYGFLATRQDL 125 Chinese rufous horseshoe bat
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