2DGX


Conserved Protein Domain Family
RRM2_LKAP

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cd12256: RRM2_LKAP 
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RNA recognition motif 2 (RRM2) found in Limkain-b1 (LKAP) and similar proteins
This subfamily corresponds to the RRM2 of LKAP, a novel peroxisomal autoantigen that co-localizes with a subset of cytoplasmic microbodies marked by ABCD3 (ATP-binding cassette subfamily D member 3, known previously as PMP-70) and/or PXF (peroxisomal farnesylated protein, known previously as PEX19). It associates with LIM kinase 2 (LIMK2) and may serve as a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures. LKAP contains two RNA recognition motifs (RRMs), also known as RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). However, whether those RRMs are bona fide RNA binding sites remains unclear. Moreover, there is no evidence of LAKP localization in the nucleus. Therefore, if the RRMs are functional, their interaction with RNA species would be restricted to the cytoplasm and peroxisomes.
Statistics
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PSSM-Id: 409701
Aligned: 11 rows
Threshold Bit Score: 114.768
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2DGX_A          6 SGNGADVQVSNIDYRLSRKELQQLLQEAFAr-hGKVKSVELSphtdYQLKAVVQMEnlqDAIGAVNSLHRYKIGSKKILV 84   human
NP_001119538  775 FANGADIQIGNLDYRMSRKELQQTLHDIFSr-hGKIKNVELSphtdYQLKATVQMEnlqEAICAVNSLHRYKIGSKRIQV 853  western clawe...
Q4SVS4        252 FSDGAEVHVANLDYRMSRKDLQQTLHNTFSr-yGRVGPDFDRtiylHHHQDVVLTTghqDAVLTTGHLHRYKIGGKRIQV 330  spotted green...
EFX71022      447 SAIAVDLHVTNLDQSIGAKEMKTLITSVFKq-hVMVMNVTVHlqndGHLAAIVRVPsiqDAQYCVSQLHRRKLGSKRIMI 525  common water ...
EFN83151      613 ANTTIELQVTNLDQNIDTKDMKRILSSVFAe-hVTVLHISIFmqsdGNFAASVRVPslpDAQYAISQLHRRKVGYKRILI 691  Harpegnathos ...
XP_002427545  671 CSSPVYLHVSGLDPHMDLISAKTMLTNSFKm-hVEVLSVSVFclsdGSLVASVKVPsfqDAQYAISQLQRRRFGSRRITI 749  human body louse
GAA54289      241 NGTGVDLLVSNLDYNISPKEWRKMLFTQLQtlvKSVQSVMLQtqadGSNCAIIRVGsieDARLAISHFHRKKIGYKRIQM 320  Clonorchis si...
NP_724393     242 MSDAVTLQITNLDYSLDESHIRSFLLNQLKp-iTPVVSLVFE----GSSYAKVTVPdlyFAKQVVSNLHRKKIGHKRMLV 316  fruit fly
XP_007891905  777 FANGADIQISNLDYRMSRKELQQILHDIFSr-hGKVKNVELSphtdYQLKATVQMGnlqEAISAVNNLHRYKVGTKRVQV 855  elephant shark
XP_014351049  609 FANGVDIHISNMDYRMSRKDLQQIIHNLFSr-yGKVKNIELSphtdYQLKATVQMEnlqEAIGAVNGLHRYKIGSKRIQV 687  coelacanth
E1BZ85        784 FANGADIQISNIDYRLSRKELQQTLQETFSr-hGKVKCVELSphtdYQLKATVQMEnlqEAISAVNSLHRYKIGSKRIQV 862  chicken
2DGX_A         85 SLATGASGPS 94   human
NP_001119538  854 SLATGATNKS 863  western clawed frog
Q4SVS4        331 SLITGGSNKS 340  spotted green pufferfish
EFX71022      526 AYDQNSHGLG 535  common water flea
EFN83151      692 SYAHTGGPNP 701  Harpegnathos saltator
XP_002427545  750 AFQNISRSQV 759  human body louse
GAA54289      321 NIIAPNGQFV 330  Clonorchis sinensis
NP_724393     317 SYTRDSSLTE 326  fruit fly
XP_007891905  856 SLATGGSNKS 865  elephant shark
XP_014351049  688 SLATGANNKT 697  coelacanth
E1BZ85        863 SLATGAANKS 872  chicken
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