2DK2,2DGU,2CPD


Conserved Protein Domain Family
RRM3_hnRNPR_like

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cd12251: RRM3_hnRNPR_like 
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RNA recognition motif 3 (RRM3) found in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
This subfamily corresponds to the RRM3 in hnRNP R, hnRNP Q, and APOBEC-1 complementation factor (ACF). hnRNP R is a ubiquitously expressed nuclear RNA-binding protein that specifically bind mRNAs with a preference for poly(U) stretches and has been implicated in mRNA processing and mRNA transport, and also acts as a regulator to modify binding to ribosomes and RNA translation. hnRNP Q is also a ubiquitously expressed nuclear RNA-binding protein. It has been identified as a component of the spliceosome complex, as well as a component of the apobec-1 editosome, and has been implicated in the regulation of specific mRNA transport. ACF is an RNA-binding subunit of a core complex that interacts with apoB mRNA to facilitate C to U RNA editing. It may also act as an apoB mRNA recognition factor and chaperone and play a key role in cell growth and differentiation. This family also includes two functionally unknown RNA-binding proteins, RBM46 and RBM47. All members contain three conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains).
Statistics
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PSSM-Id: 409697
Aligned: 20 rows
Threshold Bit Score: 106.176
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2DK2_A        15 VKVLFVRNLAttvTEEILEKSFSEf-----gKLERVKKLkDYAFVHFEdRGAAVKAMDEmngk-eieGEEIEIVLAKP 86  human
XP_002590787 330 VKVLYVRNLAveaAEEIIQAKFEPy-----gTVERVKKIkDYAFVHFEnREDAIKAMEDlngk-eleGSAMEISLAKP 401 Florida lancelet
A0AV96       245 VKILYVRNLMietTEDTIKKSFGQfn---pgCVERVKKIrDYAFVHFTsREDAVHAMNNlngt-eleGSCLEVTLAKP 318 human
2CPD_A        15 VKILYVRNLMlstSEEMIEKEFNNik---pgAVERVKKIrDYAFVHFSnREDAVEAMKAlngk-vldGSPIEVTLAKP 88  human
Q8TBY0       235 VKVLYVRNLMistTEETIKAEFNKfk---pgAVERVKKLrDYAFVHFFnREDAVAAMSVmngk-cidGASIEVTLAKP 308 human
EDO46547     231 VKVLYARNLLlstTEETIEQAFSKf-----gEVERVKKIkDYCFIHFRtKEQARDAMEAmnet-eldGNEIEVTLAKP 302 starlet sea anemone
CCD61005     257 VKILYVRNLMlstTEESLRDSFIKaaggdpnSVERVKKIsDYAFIHFReREQALQCLHTlndt-yidGSKIEVTWAKP 333 Schistosoma mansoni
EEC10158     240 VMVLYVRNLVlstTEDELREVFSLng---slKVSKVKKIrDFAFIHYRsREEATTALEAmqtnnaftPSKLCRSVEEA 314 black-legged tick
Q08BH5       219 VRVLYVRNLMlstTEETLRSEFSQlk---pgSVERVKKLtDYAFIHFYnREDALTALESmngk-vidGSPIEVTLAKP 292 zebrafish
XP_002108624 222 VKIVYVRNLLlstTEESLREIFQSi-----aRVERVKKIrDYAFIHFTsKEDAHMAITLkngq-iidGSTVEVTLAKP 293 Trichoplax adhaerens
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