Conserved Protein Domain Family
RRM_PPIL4

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cd12235: RRM_PPIL4 
RNA recognition motif (RRM) found in peptidyl-prolyl cis-trans isomerase-like 4 (PPIase) and similar proteins
This subfamily corresponds to the RRM of PPIase, also termed cyclophilin-like protein PPIL4, or rotamase PPIL4, a novel nuclear RNA-binding protein encoded by cyclophilin-like PPIL4 gene. The precise role of PPIase remains unclear. PPIase contains a conserved N-terminal peptidyl-prolyl cistrans isomerase (PPIase) motif, a central RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), followed by a lysine rich domain, and a pair of bipartite nuclear targeting sequences (NLS) at the C-terminus.
Statistics
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PSSM-Id: 409681
Aligned: 31 rows
Threshold Bit Score: 141.64
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8WUA2       237 PPENVLFVCKLNPvttDEDLEIIFSRFGpIRSCEVIRDwKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFS 316 human
AAL24306     240 PPDNVLFVCKLNPvteDEDLHTIFSRFGtVVSADVIRDfKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRIHVDFS 319 thale cress
EFN52100     236 PPPNMLFICKLNPvttEEDLEIIFSRFGtITSCDIIRDwKTGDSLNYGFIGFDSEESCEQAYFKMNNVLIDDRRIKVDFS 315 Chlorella varia...
XP_001697322 236 PPPNMLFICKLNPvtsEEDLEIIFSRFGhVTSCDIIRDfKTGDSLNYGFIGFDSDEACEAAYFKMNNAVIDDRRVRVDFS 315 Chlamydomonas r...
CAC35733     222 PPENVLYVCKLNPiteEKDLEVIFSKFGlIKNCEVVRDwKTGSSLQYAFIEFETIAACEEAYMKMENVIIDERRIHVDFC 301 Paramecium tetr...
AET37375     238 PAENVLFICKLNPltkAEHIATIFERFGdVLSVEIVRDkKTGNSLGYGFIEFETKEACEQAYSKMDNTLIDDRRIHVDFS 317 Eremothecium cy...
CBH11382     421 PEGNVLFVCRLNPlttSEGLEMCFSQFGkVKSAQVIRDsKTGDSLCYGFVEFADEETCYRAHQKMDNALIDDRRIHVDFS 500 Trypanosoma bru...
XP_654797    225 PLENVLFICKMNPitnEEDLEEIFRKYGkIRSVEIIRDrKSKKSLGYGFIEFETKEGCENAYQKMDNVIIDERRIHVDFS 304 Entamoeba histo...
XP_002678780 276 PPDSVLFVCRLNPitsEKSLRTIFLQYGnIVKCEIVKNrKTGKSKTYAFIEFEDAESCERAFLKSEGLVIDDHKIHVDFS 355 Naegleria grube...
EAL61158     240 PPDHVLFVCKLNPiteAEDLELVFSQCGtVKSCEVVRDkVTNDSLCYAFVEYSTKEECEKAYLKLENILIDERRIHVDFC 319 Dictyostelium d...
Q8WUA2       317 QSV 319 human
AAL24306     320 QSV 322 thale cress
EFN52100     316 QSV 318 Chlorella variabilis
XP_001697322 316 QSV 318 Chlamydomonas reinhardtii
CAC35733     302 QSA 304 Paramecium tetraurelia
AET37375     318 QSI 320 Eremothecium cymbalariae DBVPG#7215
CBH11382     501 QSV 503 Trypanosoma brucei gambiense DAL972
XP_654797    305 QSI 307 Entamoeba histolytica HM-1:IMSS
XP_002678780 356 QSI 358 Naegleria gruberi strain NEG-M
EAL61158     320 QSV 322 Dictyostelium discoideum AX4
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