2YTC,5MQF


Conserved Protein Domain Family
RRM_RBM22

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cd12224: RRM_RBM22 
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RNA recognition motif (RRM) found in Pre-mRNA-splicing factor RBM22 and similar proteins
This subgroup corresponds to the RRM of RBM22 (also known as RNA-binding motif protein 22, or Zinc finger CCCH domain-containing protein 16), a newly discovered RNA-binding motif protein which belongs to the SLT11 gene family. SLT11 gene encoding protein (Slt11p) is a splicing factor in yeast, which is required for spliceosome assembly. Slt11p has two distinct biochemical properties: RNA-annealing and RNA-binding activities. RBM22 is the homolog of SLT11 in vertebrate. It has been reported to be involved in pre-splicesome assembly and to interact with the Ca2+-signaling protein ALG-2. It also plays an important role in embryogenesis. RBM22 contains a conserved RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a zinc finger of the unusual type C-x8-C-x5-C-x3-H, and a C-terminus that is unusually rich in the amino acids Gly and Pro, including sequences of tetraprolines.
Statistics
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PSSM-Id: 409671
Aligned: 20 rows
Threshold Bit Score: 113.919
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2YTC_A        12 ITTLYVGGLgd----tITETDLRNHFYqFGEIRTITVVqrqQCAFIQFATRQAAEVAAEKSfnkLIVNGRRLNVKWGR 85  human
30145708     234 ITTLYIGNLgpsgaqqVTEKDLNDFFYqYGDIRCLRVLtekGCAFIEFTTREAAERAAERSfnkTFIKGKRLTIRWGE 311 Caenorhabditis el...
15227567     227 IRTLYVGGLns----rVLEQDIRDQFYaHGEIESIRILaekACAFVTYTTREGAEKAAEELsnrLVVNGQRLKLTWGR 300 thale cress
XP_002403460 231 ITTLYVGNLge----rLTEKDLRDHFYqYGEIRQITMLarhQCAFVQFTSRTSAELAADKTfnkLILAGRRLVIKWGR 304 black-legged tick
EFX70882     233 ITTLYVGNIge----kMLEKELRDHFYqYGEIRSITIVsrqQCAFVTYVTRSAAELAAEGTfnkLIIQNRRLVIRWGK 306 common water flea
NP_649440    231 ITTLYVGNLpe----eITEPELRDQFYqFGEIRSIALVprqQCAFVQYTKRNAAELAAERTfnkLVIQGRKVSIKWAH 304 fruit fly
EFN59436     223 ICTLFVGGVtd----dISKDDLRDQFYpFGELRSVKKVasrKCAFVTYATRGAAERAAEELankLVVKGERLKLLWGK 296 Chlorella variabilis
EGD76810     125 ITTLYVGGLred--ygINETDIRDVFYqHGEIQRITITpnkKNAFVEYTTREAAERAMSELhnsLCIKGHYLRLLWGR 200 Salpingoeca sp. A...
EDO31981     232 ITTLYVGGLeg----kVTEQDLRDHFYqFGELRSISMVprqNCAFVCFTSRAAAEAAADRSfnkLILKGRRLKIMWGK 305 starlet sea anemone
BAE93304     234 ITTLYIGGLge----aVNEEDLRDQFYhYGEIRSIHMAtnqNYAFVQFTKRSDAETAAKRTagrLMIKGKRIVVRWGK 307 Ciona intestinalis
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