4AQN,4EPF


Conserved Protein Domain Family
Pesticin_RB

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cd12220: Pesticin_RB 
Click on image for an interactive view with Cn3D
Pesticin Translocation And Receptor Binding Domain
Pesticin (Pst) is a anti-bacterial toxin produced by Yersinia pestis that acts through uptake by the target related bacteria and the hydrolysis of peptidoglycan in the periplasm. Pst contains an N-terminal translocation domain, an intermediate receptor binding domain, and a phage-lysozyme like C-terminal activity domain. The N-terminal domain is further divided into the TonB box (which binds TonB) , the T (translocation domain) and the R (receptor binding domain). Bacteriocins such as pesticin are produced by gram-negative bacteria to attack related bacteria stains. Pst is transported to the periplasm via FyuA, an outer-membrane receptor of Y. pestis and E. coli, where it hydrolyzes peptidoglycan via the cleavage of N-acetylmuramic acid and C4 of N-acetylglucosamine. Disruption of the peptidoglycan layer renders the bacteria vulnerable to lysis via osmotic pressure.
Statistics
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PSSM-Id: 240617
Aligned: 7 rows
Threshold Bit Score: 314.382
Created: 1-Feb-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
TonB box
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:TonB box [polypeptide binding site]
Evidence:
  • Comment:TonB box is critical for binding to TonB, facilitating transport across the outer membrane

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1       ########                                                                        
4AQN_A        1 MSDTMVVNGSGGVPAFLFSGSTLSSYRPNFEANSITIALPHYVDLPGRSNFKLMYIMGFPIDTEMEKDSEYSNKIRQESK 80  Yersinia pestis
4EPF_A        5 XSDTXVVNGSGGVPAFLFSGSTLSSYRPNFEANSITIALPHYVDLPGRSNFKLXYIXGFPIDTEXEKDSEYSNKIRQESK 84  Yersinia pestis
CCC82852      1 MSDTMVVNGSGGVPAFLFSGSTLSSYRPNFEANSITIALPHYVDLPGRSNFKLMYIMGFPIDTEMEKDSEYSNKIRQESK 80  Yersinia pestis
CAA90860      1 MSDTMVVNGSGGVPAFLFSGSTLSSYRPNFEANSITIALPHYVDLPGRSNFKLMYIMGFPIDTEMEKDSEYSNKIRQESK 80  Yersinia pestis
EIT08233      1 MSDTMVVNGSCGVPAFLFSGSTLSSYRPNFEANSITIALPHYVDLPGRSNFKLMYIMGFPIDTEMEKDSEYSNKIRQESK 80  Yersinia pestis ...
ZP_02335506   1 MSDTMVVNGSGGVPAFLFSGSTLSSYRPNFEANSIQMALPHYVDLPGRSNFKLMYIMGFPIDTEMEKDSEYSNKIRQESK 80  Yersinia pestis ...
EHV67255      1 MSDSMIVNGSGSVPAFLFSGSTLSSYRPNFEANSITIALPHYVDLPGRSNFKLMYIMGFPIDTEMEKDSEFSNKIRQESK 80  Escherichia coli...
Feature 1                                                                                       
4AQN_A       81 ISKTEGTVsYEQKITVETGQEKDGVKVYRVMVLEGTIAESIEHLDKKENEDILNNNRNRIVLADNTVINFDNISQLKEFL 160 Yersinia pestis
4EPF_A       85 ISKTEGTVsYEQKITVETGQEKDGVKVYRVXVLEGTIAESIEHLDKKENEDILNNNRNRIVLADNTVINFDNISQLKEFL 164 Yersinia pestis
CCC82852     81 ISKTEGTVsYEQKITVETGQEKDGVKVYRVMVLEGTIAESIEHLDKKENEDILNNNRNRIVLADNTVINFDNISQLKEFL 160 Yersinia pestis
CAA90860     81 ISKTEGTVsYEQKITVETGQEKDGVKVYRVMVLEGTIAESIEHLDKKENEDILNNNRNRIVLADNTVINFDNISQLKEFL 160 Yersinia pestis
EIT08233     81 ISKTEGTVsYEQKITVETGQEKDGVKVYRVMVLEGTIAESIEHLDKKENEDILNNNRNRIVLADNTVINFDNISQLKEFL 160 Yersinia pestis ...
ZP_02335506  81 ISKTEGTVsYEQKITVETGQEKDGVKVYRVMVLEGTIAESIEHLDKKENEDILNNNRNRIVLADNTVINFDNISQLKEFL 160 Yersinia pestis ...
EHV67255     81 ISKTEGTVsYEQKITVETGQEKDGVKVYRVMVLEGTIAESIEHLDKKENENILNNNRNRIVLADNTVINFDNISQLKEFL 160 Escherichia coli...
Feature 1             
4AQN_A      161 RRSVNI 166 Yersinia pestis
4EPF_A      165 RRSVNI 170 Yersinia pestis
CCC82852    161 RRSVNI 166 Yersinia pestis
CAA90860    161 RRSVNI 166 Yersinia pestis
EIT08233    161 RRSVNI 166 Yersinia pestis PY-91
ZP_02335506 161 RRSVNI 166 Yersinia pestis FV-1
EHV67255    161 RRSVNI 166 Escherichia coli DEC6E

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