Conserved Protein Domain Family
Csn2

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cd12218: Csn2 
CRISPR/Cas system-associated protein Csn2
Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.
Statistics
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PSSM-Id: 213411
Aligned: 18 rows
Threshold Bit Score: 166.254
Created: 1-Aug-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
tetramerputative DNA
Feature 1:tetramer interface [polypeptide binding site]
Evidence:
  • Comment:by similarity to other members of this family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                ## ### ##  #                       # #             #   #
EIA32541       2 KLYYTSHKNIDINTGkITVLGTNNVNVYKEFIDTFLNGyGSNIQLsdDKYNRKDISTSIDWDGDVML-TDRIgKKYMNIL 80  Lactobacillus s...
YP_001988300   2 NLAYYPFQLITTKPSeVTVIDTASPKVLTDLIEALRND-LDKVVLsnDQLEPQEIRKASLWIGDPML-ELDLdKLFQRLI 79  Lactobacillus c...
ZP_10313074    2 NLTYYPFPPFKINTGqVNILDIGNSQMYADICQGFRDR-TDDLRVsnDNLELQTMSSRCSWYGDLMLsVDLN-HLFMKKI 79  Lactobacillus p...
ZP_08476262    2 KLIYYPFKSFTIDAGvPTILETDNHEVYRNLLINFTDM-ADNLNFsdDTLELISTTKALKWFGDASIcTDLN-KLFLPQL 79  Lactobacillus c...
EHN59355       4 QITRYPFDPVALDTG-LNILSVEDTQLFFDFCQDFQSEeGKTIIT--SGGKQLVMQKNMTFFGDVTRvFDFN-QLYLKAA 79  Oenococcus kita...
ZP_08480089    4 SIVCFPNNPIKIDSG-LTMISIANHELYWQLSTGLKET-SEDVTLg-QNGHIVDVNKTVMFIGDIGAqLDVN-KLYQKNI 79  Leuconostoc gel...
ZP_09041573    2 NITFYPYHPFSVQNKkITVCSTSSPEVYTKLIIGMSGA-QETVKFsnDQYELMDYSKAVIWGGDVAA-INLN-HLFQNRL 78  Lactobacillus c...
YP_004841199   2 KLTFYPYSPFEIEKGeLTIIQTTNKKFYFDVINGLKNL-DRLVLS--QDDEKIDAKLSLVNLDDVVT-DTEQtLKFKTKI 77  Lactobacillus s...
ZP_04644899    2 IISYEGHHPIKVSDGkITFIKVANSAVYRDFILSFQGK-SEKVKFfdEHYNQLEKNKSIDWVGDVLItQDYL-NSYQNKI 79  Lactobacillus j...
ZP_08080331    2 KIAYVTHDSLDIESGkVTAICTASKSVYLEIIRSFNNA-DDKLFLcsDDYKEMELKDGIDWEGDVME-IDVG-KKYLNEL 78  Lactobacillus r...
Feature 1           #           #  ## ##  ## ### ####  #### ##  ### #####    #####     #  #   #  
EIA32541      81 IKKIIENLtDDERQAILKSVNSLYDRIREVLYKIDIPLQVDYDNDLTRLFKYCQVHTEALLWKNAYDRISSDVKLHVELN 160 Lactobacillus s...
YP_001988300  80 YKRMELLIeNQRLVELIDQSQQMAMYLLQDPFLSDLPVTVEPGGKLEQIMKYCNVHFDEAVTTESTSKIEALIQTLTKLE 159 Lactobacillus c...
ZP_10313074   80 QAQIIKLMaDEQQVAVLDQSRAMIAKIMEASFLLDLPLDVEEAPGLEQALKFAGIHFPTDLTHNPSAVLEALVQTHVELG 159 Lactobacillus p...
ZP_08476262   80 YKQIKLNLtAEQNRIITDQSRTLKNVVLEATYSLDLPLNIGDQIATEKVLKFCDLHFDTSLSTNCYGIIETILKTAKELN 159 Lactobacillus c...
EHN59355      80 IKTLSKNFdEMDLQQLDDLNGQINRLFTKVIFSSNLPIDLNLEFDLMETIKSRKIVIDMPILNTPYDKIRSTIDLAAELS 159 Oenococcus kita...
ZP_08480089   80 VNTMKNYAdDQALEVFYKINSELNHVLENIILENNLPFYFQTEFNIVELINEKKIRIETLTNSSGFGKIEDVVSVAGEFS 159 Leuconostoc gel...
ZP_09041573   79 IKKFAADLtDQQRQKLTQLDSEIRSTILDAAFMYELTLDVNQEWDLQRMIKFYNLQFSTVVQHDPYGIIESIVQTAVELN 158 Lactobacillus c...
YP_004841199  78 KNDVLNNLnDDNRKRLFQLDAEMKEIFLGAAYLDDFPIQVDEDWDINKQYAYTGTKLLNVNHDNPYDIIKEVLNLYAKFD 157 Lactobacillus s...
ZP_04644899   80 ISNLFDTLnENQRNKIFNTWRQLSTDIQDIIFMTDLPIEVGENLDLKKLFKFDGIHFDDSVLSDPYAIIETVVKIHIECK 159 Lactobacillus j...
ZP_08080331   79 LKKSVEFMpDELRKQVYELERQTATALQDSIYMFDLPLIVSMDNDLKKTLKNYHFSVDSSIAYDPCAIIETDIKIHAECA 158 Lactobacillus r...
Feature 1               ##  ##           #              #  #                    
EIA32541     161 RKRIIGLTNVAHYLTEGEFQELVSLVKMTNSSMFIIE-FTEKNGQRffENCDNYYIDEDYVDW 222 Lactobacillus salivarius SMXD51
YP_001988300 160 EKKLVILTNVSHYLSARDFSSVTEQIGDTELQVVLIE-FSKVNRKKyfEKCQYIYIDEDFVDN 221 Lactobacillus casei BL23
ZP_10313074  160 LKQCPVMTNVSHYLNPEQWAVFEQQVADLGTTVIIIE-YSEMNRMEkfKDCCYYYVDEDLVDW 221 Lactobacillus pentosus KCA1
ZP_08476262  160 EQRILGFMNISDYLTLQELQDLFELIRTLDLTVLIIK-FSENQRSVefNNCRYYYIDQDYVDW 221 Lactobacillus coryniformis subsp...
EHN59355     160 DPHLLVFTNAFQYLTMGQTNQLAEYSRSMERNVLFLErFDSKIDLT--EAANSYFFDKDFVQF 220 Oenococcus kitaharae DSM 17330
ZP_08480089  160 EQRLIVFTNLYLLLSVDQIDYLNNLAKTMNLCLISLN-LTQNPVMTkqGLPPEIFIDEDFVQF 221 Leuconostoc gelidum KCTC 3527
ZP_09041573  159 ESKIITLINVSHYLSINQFNELVRLVATLNVKLFLIE-FSEEVKSDqyQKCYYYHIDNDYVEW 220 Lactobacillus curvatus CRL 705
YP_004841199 158 SKKLLVLKNLFNYLYSNQIESLVQMIKTLELNVLILD-FSSEDYSTflEECRYYCIDRDFVRW 219 Lactobacillus sanfranciscensis T...
ZP_04644899  160 LNSVVTFANVSHYLTKEQLNNLITFINEVNMPLILIE-FSSSDFKVvsGDARVCYIDEDFVDW 221 Lactobacillus jensenii 269-3
ZP_08080331  159 LKKAIGVSGLATYLTPEEFSYIKDVVKEMDVPLLMID-YNVSGWKSyfDNCNVMYIDEDFIDW 220 Lactobacillus ruminis ATCC 25644

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