3ZTH


Conserved Protein Domain Family
Stu0660_Csn2

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cd12217: Stu0660_Csn2 
Click on image for an interactive view with Cn3D
Stu0660-like CRISPR/Cas system-associated protein Csn2
Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. This family of Csn2 proteins includes Stu0660, the proteins are larger than other (canonical) Csn2 proteins as they have an additional alpha-helical C-terminal domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.
Statistics
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PSSM-Id: 213410
Aligned: 10 rows
Threshold Bit Score: 297.296
Created: 1-Aug-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative DNAtetramer
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:The Csn2 tetramer forms a central channel, lined with positive charges, that is believed to accommodate a dsDNA segment

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                     #                                  
3ZTH_A         1 XKFFVQHpYKERIELNIGAITQIVGQNNELKYYTWQILSWYFGGKKYSSEDlsifdyeEPTILDEaREIVKRSSYHYIDI 80  Streptococcus t...
EID26663       1 MKMNISHpYKDKISLSFGQFTQIVGQDQQLKYYIWQILLWYFGGKKYSEEDlvlfeqnEPKILID-DIMVSRSEFSVIQV 79  Streptococcus o...
ZP_09892802    2 STLTFSHpKLKHIEMGFSQLTQVVGDNTELKQQLWQNISWYLSKHKYSESElsilnynEPQIWED-GLDLSRSKFRTIII 80  Listeriaceae ba...
EFT93849       2 KQIRLEYqYQQFIEFSLEDYVFFYGGENQWRRKILRTLKRFAKQKALSDLEesvygdnGIEIFLE-EKKLKAKSIDFYFL 80  Enterococcus fa...
ZP_03624523    1 MKWLITHhVLNNIPIHVGQFTQIVGQNYELKYYIWQILIWYFGGKKYSEEDlilfnqeEPVISQD-SEAIKRNAFKIISI 79  Streptococcus s...
YP_002937594   1 MNVEITE-FEKRFCFELCPVTQLCGQNVRKKNYIFESLRRYFGTFKYSESKnk----wRDNVFID-NNQVGRKFFSVLSI 74  Eubacterium rec...
ZP_09443140    1 MRLKIEIdDQSFFELDFGDIVYISGYNHQNMWKIYRSLYYYFNKSPMLSTNiyg--ddNIEISLD-DVSPSTKNTQTYFI 77  Lactobacillus v...
ZP_02024919    1 MRLTIKN-FKKSYEVGLEKVNQWCGSNVIRKNEILKMLSKYFSKSKYVEWEek----iRCDVFCG-KEKLGREYFEIYNV 74  Eubacterium ven...
YP_003430851   1 MRLHFTHpYKDNLDINFGQFTQIIGQNQQLKYYMWQIFMWYFDGKKYSEEDlslfnqeEPEILCE-GKSLKRNSFSVISI 79  Streptococcus g...
ZP_08013531    1 MKMNFTHpYRENLSINFGPFTQIVGDNQQLKYYMWQLLIWCFNGKKYNVEDlnlfeqmEPEITEE-NTIFKRTDYKIISI 79  Streptococcus a...
Feature 1                     #                                                                  
3ZTH_A        81 SSFKDLLEQXEYKKGTLAQ-GYLRKIVNQVDIVGHLEKINEQVELIEEAXNRHINLncgQVEYHLEn-LPl----tLDQL 154 Streptococcus t...
EID26663      80 SNINDLIEQMEYKKGTVAY-DYIKKKINYIEIMEQIENINDNLDRISLLLNQKLNLqldEIIYHTEa-KYf----nTDQL 153 Streptococcus o...
ZP_09892802   81 ESISDIHELLGANKGTPTF-DVLNQVMKNLEISKNIEKINQEIIQIENQLNASEEIqqlNGEKKFKw-KVaveefnSKIL 158 Listeriaceae ba...
EFT93849      81 EDNTSIFQQMNFIKGTLLH-QELLYLQDDFDITNQMSNLNDQLLKLENLMNDKLNNyltNIEPHFL--EM------NFQD 151 Enterococcus fa...
ZP_03624523   80 AEVGDILEQISYKKGTIGF-SYLSLKMQNIEIIEELEILNYHLHKIAQKVNSSISLindEIEYEVGttDLl-----PEQI 153 Streptococcus s...
YP_002937594  75 SNKTDIIQMIKMTKQSLLM-EYVKNVIQDFDWQLHLRNLSEEIEIMFQIINDQVNK---VGDIELSy-SM------ADVW 143 Eubacterium rec...
ZP_09443140   78 SNRDSIYQQMIYKKGNLLF-ENLNTLNDSFEITRILEELNDTNTKLSLLVQEHINNyanNLIIDFE--DV------TYFD 148 Lactobacillus v...
ZP_02024919   75 DSREQFISQLKIGKNTLLMkYILNKILMSFDIETDMEKINDLLMRIYENINNELFSsfeNFSIDFE--SS------NLFE 146 Eubacterium ven...
YP_003430851  80 SDIQDLLEQMSYKRGTVAC-DFLKLHLNTVDVMTEVDEINDKLDKISLTVNHNLDLsikDVTYHTEs-CVv----tSEQL 153 Streptococcus g...
ZP_08013531   80 SDIQDLIEQMAYKKGTVAF-DFLKSKLDNLEIMEQIDYINDKLDQISMIVNERLNFqieGIHYHTEs-QYf----tTEQL 153 Streptococcus a...
Feature 1          #                                                                             
3ZTH_A       155 LTKNFSPFfa-iENKNLSFEWVSNIDKLSLFLEXLDHLLSQTTEKYLIVLKNIDGFISEESYTIFYRQICHLVKKYpNLT 233 Streptococcus t...
EID26663     154 IQKNFLPYfg-kNDKNISFEFVDNKTKFLLFLSMLEVMATNSSEKFLLVLRNLDDFLSYSDFVECCEKMEFLTNHNnSLY 232 Streptococcus o...
ZP_09892802  159 LQKNVSLMpt-yEERTYATEYVDGLTKYMSLLDLLEINLESSSEMILLMIKNIDDTLSYQEYEEVMNSMKRLTTKHpNFY 237 Listeriaceae ba...
EFT93849     152 ILKYSLSLnyleNGQSLPLEMMDTGELLAEFIYLLQRSISRREQPVWLVITNPESFLETESIHYLFQQLKKLAQETkQLK 231 Enterococcus fa...
ZP_03624523  154 LTKQLTPHfk-kSRDEIAIEFISNEKKLCFLLQMLNAIMQEQTKPILLVLKNLDDYLTYDSFVRIAQYLEELSNKYpYFN 232 Streptococcus s...
YP_002937594 144 DMVQKSEVs---GIDDTELSDKSNAELILILLNIVDNVLKNNPKKTLILFENLDHLVSLKEYVEIIHAADTISKKY-DLY 219 Eubacterium rec...
ZP_09443140  149 VLKYFLKVsyedSNRTFPLEFMETESLVDELLNLIESSLKKANNDTWIVLYNLDSFVSRSAKKTILNKLKEFTDRF-ELK 227 Lactobacillus v...
ZP_02024919  147 IMQESVAC----NKNGENINYLSTYELIINYIELIEKLNEESGKQKLLIINNIDHMINQQEYRKIFEYSKTISEKS-DIN 221 Eubacterium ven...
YP_003430851 154 LSKYFQPYfn-yQGRNISFEFVDNETKVMFLLKMLQERLSNDTNNILLIFKNMDDYLDYSSFITICKTITQMTEKFpNFY 232 Streptococcus g...
ZP_08013531  154 ILKNFLPYfg-fKDKNISFEFVENETKFIIFMQMLEQLIQGQTNRILLVLRNMDDYLNYCSFVKCCEQLEEMADNYsNFS 232 Streptococcus a...
Feature 1                                                                                        
3ZTH_A       234 FILFPSDQGYLKIDEENSRfVNILSDqVEHLYDv-eFXYERVXKYYPSNDFPtREGFRXSLETVTPYLlt-kxLRQPSLS 311 Streptococcus t...
EID26663     233 IVLFPSNEGYLHVTKEVLEeINIVSDyVDHFYSl-eFMYDRFVNQYPINQIPdEQDFLTSLRKIGSYLfs-sdILHMSLS 310 Streptococcus o...
ZP_09892802  238 CMVFPSQIGYVYISEEHIEsILVVGEeAHSLADg-rNLYTRVCAYYPDQTIPsYNEFLGRLKMIAPYLftskkQSIQMNV 316 Listeriaceae ba...
EFT93849     232 FFIFSNRSLPLPYTEEDVEkTILLYDkYQQLPVf-dVFRQSIERHYPDQLSWtNQQLIDAFYRVCHFVgd-qyTKNYLLP 309 Enterococcus fa...
ZP_03624523  233 TILFPSQEGYLYLTEATLEtVNIVSDrIEHYPAf-tFLYTRYQQSYPSTSPLgEKEFLNSLRKISSYLfssdiNRVVSLA 311 Streptococcus s...
YP_002937594 220 FIFSSSLNKYVCCDIDFLEgISVFGDvYFQMPEy-nRLYLFLKENYPYEKEFsNEHVKKIICNIIQNIg----QSNFLNT 294 Eubacterium rec...
ZP_09443140  228 VIYLGNSLTDCSITSAETEkIVVAADeFHQLLPi-eNLSKSIKMRYPNDFPHsTEQLVQSLIQVIPYVg---nKENVSLN 303 Lactobacillus v...
ZP_02024919  222 FLFTISLDGYCVVDKEDFEsITIIND-EEFIMPeynRVADYIEKNYPIYRESdYQWVEYNLENCINKIg----VSNQSVD 296 Eubacterium ven...
YP_003430851 233 CTIFPSNESYLYVTKETIEhVTIVSDfIESLFDl-dFMYERFIGRYPSNNIPsKSEFLILLQKNASYLfs-dqISYISLG 310 Streptococcus g...
ZP_08013531  233 VIIFPSNEGYLYLNRENMEyVNIVSDlVEHFYEf-sFMYERFIGQYPTNDVPtEDDFIVSLQKISPYLfs-kdVTHMSLS 310 Streptococcus a...
Feature 1                                                 
3ZTH_A       312 lvDSVILNILNQLfh-fsYRIRCSQTp----dKELLQKFLE 347 Streptococcus thermophilus LMG 18311
EID26663     311 veDQVALKILNNL-----YQYEMKTKfrsesvNPMLLKYLE 346 Streptococcus oralis SK1074
ZP_09892802  317 k-ELVLIKIINELf---qYFDLIPVAvl--qhSQLEYDFLY 351 Listeriaceae bacterium TTU M1-001
EFT93849     310 k-DMILLKLLKELlddnsECVETSMEk----lTVLEEQYFR 345 Enterococcus faecalis TX0012
ZP_03624523  312 diDLVTLKIVNSL-----YQYDIKMVymykgiSKLEENYLS 347 Streptococcus suis 89/1591
YP_002937594 295 veENVVCKLINKTl---lLDDKIPDE------KMPEMAFLK 326 Eubacterium rectale ATCC 33656
ZP_09443140  304 prDLVLLKIVNDI-----LGYETSLDysdqilNSAETKFLL 339 Lactobacillus versmoldensis KCTC 3814
ZP_02024919  297 lgINIILCILNRS-----LNVDNKVKyk---tNNIELNFLN 329 Eubacterium ventriosum ATCC 27560
YP_003430851 311 isDMVAIKILNSL-----YQYDKSVVypipkiDPLEISFLK 346 Streptococcus gallolyticus UCN34
ZP_08013531  311 iqDMVTLKIMNSL-----YHYNKKIHfaynppTQLLINFLK 346 Streptococcus anginosus 1_2_62CV

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