3ZTH,3V7F


Conserved Protein Domain Family
Csn2_like

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cd12216: Csn2_like 
Click on image for an interactive view with Cn3D
CRISPR/Cas system-associated protein Csn2
Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.
Links
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Statistics
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PSSM-Id: 213409
Aligned: 7 rows
Threshold Bit Score: 127.529
Created: 6-Sep-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
tetramer
Conserved site includes 56 residues -Click on image for an interactive view with Cn3D
Feature 1:tetramer interface [polypeptide binding site]
Evidence:
  • Structure:3V7F: Streptococcus pyogenes Csn2 dimer is part of the biologically relevant tetramer structure, contacts at 4 A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                       ## ### ##  #                                         
3ZTH_A             3 FFVQHpykeRIELNIGa--ITQIVGQNNELKYYTWQILSWYfggkkyssedlsifdyeEPTILDe-aREIVKRSSy--hY 77  Streptococc...
ZP_08660867        5 QISIEt---VGVLKMNs-gLNLITVANSELYLRLIAKLSNDi----------------EDDIIYs--YDNKIKPLck-sG 61  Fructobacil...
3V7F_A             7 LNFSLl---DEPIPLRg--GTILVLEDVCVFSKIVQYCYQYe---------------eDSELKFf-dHKMKTIKEs--eI 63  Streptococc...
ZP_03942755        3 ISYASh---QPVKVSNe--QVTVIGTNSSVVYQDLLRGFRDd---------------gQIKVCSd-tYDELEVSKt--iD 59  Lactobacill...
ZP_03683854        2 KLRIMg--fEEIDFNDq-dNTILIIKNHKFYAHILSLLSSIly-------------dkNKSTELlviDGEKNITTn---V 62  Catenibacte...
REF_tigr:TDE0330   3 LVHPDi---KNQIIFSenkVNVLTIENKTFFTEFVSELFSQysg------------neGKFILS---EDDKELSIpktcE 64  Treponema d...
EIA32541           3 LYYTSh---KNIDINTg-kITVLGTNNVNVYKEFIDTFLNGy----------------GSNIQLs-dDKYNRKDI----S 57  Lactobacill...
Feature 1               #    #                 #   #   #           #  ## ##  ## ### ####      #### ##
3ZTH_A            78 IDIS--SFKDLLEq-xEYKKgtlaqGYLRKIVNQVDi------vGHLEKINEQVELIEEAXNRHINLncgqveYHLEnLP 148 Streptococc...
ZP_08660867       62 LLIGdpVSGRDIRgfySKFV-----PKILAQSISEEg------iHELFQLNQKIQSVIASEIIDNNLp----fEISQgWE 126 Fructobacil...
3V7F_A            64 MLVTd-ILGFDVNs--STILk----LIHADLESQFNekp--evkSMIDKLVATITELIVFECLENEL------DLEYdEI 128 Streptococc...
ZP_03942755       60 LVGDv-CTGGEEId--RRYLs----RITKAFLDDLTdpq--rnkIHDSLNRLYNTVQEQLYMIDLPI------EVTYdFD 124 Lactobacill...
ZP_03683854       63 LLITd-LYKIDFNd--KNLLk----EIYSEISKSITsde--ekcMRYQELVDDLVAILENELEDYNLe----fDYKNdLT 129 Catenibacte...
REF_tigr:TDE0330  65 LILN--PINLDIN---NKQNl---nKIYSILKQSISdey---nyLKTCTIKSEILKHIDDVLLSLDIp----lKRSEeLD 129 Treponema d...
EIA32541          58 TSID--WDGDVML---TDRIg---kKYMNILIKKIIenltdderQAILKSVNSLYDRIREVLYKIDIp----lQVDYdND 125 Lactobacill...
Feature 1               ### #####            #####     #  #   #             ##  ##               #   
3ZTH_A           149 ltLDQLLTKNFSpffaienknlsfEWVSNIDKLSLFLEXLDHLLsqttEKYLIVLKNIDGFiseesyTIFYRQICHLVKK 228 Streptococc...
ZP_08660867      127 l-ERLLHSQNIVve--------kgNNSTIFGKIEEVIHVMGMLD----ESRYLFLTNASLYc----kLSDLNQLHECLLA 189 Fructobacil...
3V7F_A           129 t-ILELIKSLGVkv--------etQSDTIFEKCLEILQIFKYLT----KKKLLIFVNSGAFl----tKDEVASLQEYISL 191 Streptococc...
ZP_03942755      125 lkELTRFAKIHFds---------gTANNPCAMIESILKVYEECH----LKTTLIFTNVRQYl----sTDQLREIEAMIKE 187 Lactobacill...
ZP_03683854      130 i-ENYLKAVSLKis--------rkAEEKLYDRLMNYVELVTELV----KKPVLVLYNCFDYl----dDEELMELIKYKNY 192 Catenibacte...
REF_tigr:TDE0330 130 l-ISIFKAVNISfe---------tEYTNLLEKIIDYISASVELN----QIKCFIFINLKQFl----hFKDLSELYKFACY 191 Treponema d...
EIA32541         126 l-TRLFKYCQVHte--------alLWKNAYDRISSDVKLHVELN----RKRIIGLTNVAHYl----tEGEFQELVSLVKM 188 Lactobacill...
Feature 1                            #  #                        
3ZTH_A           229 ypnltFILFPs-----DQGYLKIdeensrfVNIlsd--qvEHLY 265 Streptococcus thermophilus LMG 18311
ZP_08660867      190 eg-vnLISIDl-----SLEKPNF-------SDEhyc--hfHIDQ 218 Fructobacillus fructosus KCTC 3544
3V7F_A           192 tn-ltVLFLEp-----RELYDFP-------QYIldedyflITKN 222 Streptococcus pyogenes serotype M1
ZP_03942755      188 ir-vsVVLIEftemehRDFYGNA-------DFYyidedfvDWHN 223 Lactobacillus buchneri ATCC 11577
ZP_03683854      193 kh-lhLLFIEn-----KNREVDS-------IAFrk----yIIDE 219 Catenibacterium mitsuokai DSM 15897
REF_tigr:TDE0330 192 ik-tnLFLIEg-----SYTSTKE-------DCEks----yIIDK 218 Treponema denticola ATCC 35405
EIA32541         189 tn-ssMFIIEf-----TEKNGQRffencdnYYI-------DEDY 219 Lactobacillus salivarius SMXD51

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