3HM6,3RYT


Conserved Protein Domain Family
RasGAP_plexin

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cd12205: RasGAP_plexin 
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Ras-GTPase Activating Domain of plexins.
Plexins form a conserved family of transmembrane receptors for semaphorins and may be the ancestors of semaphorins. Ligand binding activates signal transduction pathways controlling axon guidance in the nervous system and other developmental processes, including cell migration and morphogenesis, immune function, and tumor progression. Plexins are divided into four types (A-D) according to sequence similarity. In vertebrates, type A Plexins serve as the co-receptors for neuropilins to mediate the signaling of class 3 semaphorins except Sema3E, which signals through Plexin D1. Plexins serve as direct receptors for several other members of the semaphorin family: class 6 semaphorins signal through type A plexins and class 4 semaphorins through type B. Plexin C1 serves as the receptor of Sema7A and plays regulation roles in both immune and nervous systems. Plexins contain a C-terminal RasGAP domain, which functions as an enhancer of the hydrolysis of GTP that is bound to Ras-GTPases. Plexins display GAP activity towards the Ras homolog Rap. Other proteins having a RasGAP domain include p120GAP, IQGAP, Rab5-activating protein 6, and Neurofibromin. Although the Rho (Ras homolog) GTPases are most closely related to members of the Ras family, RhoGAP and RasGAP show no sequence homology at their amino acid level. RasGTPases function as molecular switches in a large number of of signaling pathways. When bound to GTP they are in the on state and when bound to GDP they are in the off state. The RasGAP domain speeds up the hydrolysis of GTP in Ras-like proteins acting as a negative regulator.
Statistics
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PSSM-Id: 213344
Aligned: 21 rows
Threshold Bit Score: 406.223
Created: 27-Oct-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative Rap
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:putative Rap interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
3HM6_X         71 GIPFLDYKVYAERIFFPGHresplhrd-------lgvpesrRPTVEQGLGQLSNLLNsKLFLTKFIHTLETQRTFsa-rD 142  human
XP_003382745 1263 QLPFHDFPTYATKVFFPAAntnhpvlsp-----pkvphgmtHDSMCVLLDEFRELVFdKKFLVAFIRTLESRPKFnl-qD 1336 Amphimedon qu...
XP_002112670 1252 GAPQHPFRVYIHKMLFPNVkhgemhpvf----apisvrgsrKSRLEDSLSSFLDLLLrDKFLITFIATLEKQPDFkp-kD 1326 Trichoplax ad...
Q626H5       1203 SPELIHFPHFVENLLWADQnlts--------------apslARTLPVTLAQFHALLSfKGFIFTIVEAAESDVSIst-sE 1267 Caenorhabditi...
ADY40164     1225 GIPFHEKAEFISRLLFRDItpnaall---------ttaslySSHLAIALAQFDSLLWnKRFIIAIVDMADGDTSFsi-dE 1294 pig roundworm
CBY24850     1393 TMPFREYRSFILHFMFPPNdeenrhyhrelcpfgtqnsrsgTIDRSMGLQEFRKLLGqREFLLVFIKTLESHPKFtt-rD 1471 Oikopleura di...
EGD75945     1444 EAHPRPFGEYARRVYFTALdthpl------------pvrprFPGTNDCIEQFTFFLQqDDFLRAFVGVMEGEGRAfsvrD 1511 Salpingoeca s...
CCD79353     1837 SVPLLTKTDMTIKSLDSAIvpphplls------pftvhvraHDDATKGISLFHALLCnRQFLYLLIHLIEEDKYIma-kD 1909 Schistosoma m...
XP_002119656 1303 RIIYLPPWEYITQVLFNQRsghpvld--------enamvgqGTVKQDALKSLLSVIKnKDVLLVLVRTLEEQRKFtv-qE 1373 Ciona intesti...
EJD73903       34 STPFHNKTESYIRILFRHTnlyngllrn----qqsldsslsFDGTPAKLPGFEYLLRnTQFLLKLVETVDSNACYtl-eN 108  Loa loa
Feature 1         #                                         #   #####      #                      
3HM6_X        143 RAYVASLLTVALHgkleYFTDILRTLLSDLVAQYVak---nPKLMLRRTETVVEKLLTNWMSICLYTFv-RDSVGEPLYM 218  human
XP_003382745 1337 KSTMASLLMVACLkdisYSTEVLEALLGNLIRRSLsntknhPKLLLRRTESVAEKLLTNWFCVTLYPYm-LECAGAPLFV 1415 Amphimedon qu...
XP_002112670 1327 KCNIASFLIVALHenmdYVTKVLMKLLIEMIRKLPpk--gqPQLFLKRNDSITEKLLSNWLALCLYQYs-NKRFGQPLYL 1403 Trichoplax ad...
Q626H5       1268 KSTLASLLISVLLrnfsYCTEIVVDLLKAHIARSVqa--krAELLFRNSDSVVEKMFSKWMSICLYSH--LTPQMNSYFY 1343 Caenorhabditi...
ADY40164     1295 KKLVSSLLMGSLLgniaYCSDVVLSLLTRHITNAIqk--rtAHLVFRQSGSVVEKLFTLWFSICLFEDi-RGTLGSPLFL 1371 pig roundworm
CBY24850     1472 RSKFAAFLMISLQgkleYATLILQYLIIDMIEKMPsh---nLGTLFRHSNTIGEKMLSYWFAMLMYRTv-YRRTGEHIFN 1547 Oikopleura di...
EGD75945     1512 RCQVASLLMCSANgdeaMGTHTLSTLLDQYFTANSrr---dPRLMLRRTESVAEKLLTAWLTTGMHDAv-LRDAARPLYN 1587 Salpingoeca s...
CCD79353     1910 KSRIASLLCAALQpkmdYLTSIMFDLMTDFLYQLRlqgdtrLATAFRRAETIVDKILSNWLTFLLYNFi-KNSVGENLFY 1988 Schistosoma m...
XP_002119656 1374 KGNMASLLTICLFddlpYYTRVMLELLTGLIQKHVsr---nPKLLLRRSESVVEKMVSHWLSINLYDEciNEQAGKPLFL 1450 Ciona intesti...
EJD73903      109 KCILSSLIVGSLLddmrYCTEVVFAILNHHIFLSLek--cePHIIFRQSGSLAEQIFTVWFSLCFLEYl-KNGPGQSMYL 185  Loa loa
Feature 1                                                                                         
3HM6_X        219 LFRGIKHQVDKGPVDSVtgkakytlndnrllredveyrpltlnallavgpgageaqgvpvkvldcdtisqakekmldqly 298  human
XP_003382745 1416 LFKAVKAQLEKGPIDVItgdarnslseekllrqpldfkvmecevemgnshtllrhtrkedagvepdpsnaddiqtikvmd 1495 Amphimedon qu...
XP_002112670 1404 LYHAIKQQISKGPVDQKtgearyclseekllreqvdeteisvmasigdgqqislklfdcdtitqakekildaiyinqpys 1483 Trichoplax ad...
Q626H5       1344 LYKALQYQTDKGPVDAVtgdarytineakllresvetktlkihivpfekcdetthlevhacdaicqlkqkvasavyketp 1423 Caenorhabditi...
ADY40164     1372 LYKALKCQIEKGPVDAItgnaryslsehkllrepidaspiqvlvvpledfdqspilvraltsdtisqlkmklldaiykne 1451 pig roundworm
CBY24850     1548 LFKKLKDLVHSEPVDQItghsrmtlseqyllrvinintnqlsitvlhheggepqfiqisglycdtvdqikerildtiywd 1627 Oikopleura di...
EGD75945     1588 LTQALKIYAWKGPVDAVtgaatytlnadallrerveyepltlhvdmnrqvyevhvnscdtigqileklklvvttagadvs 1667 Salpingoeca s...
CCD79353     1989 FYRALLQQINMGPRDAItgkarytldsssllqtemtgkqitlcvedpqqlfglptsyisvkvldcdtitqakekildgiy 2068 Schistosoma m...
XP_002119656 1451 LTKAVHYLVSSAPCDVIakkafnslnemtllgtelqyetvvlhativeeggkvttsvdvkvvnvdsikqaktkiieavyk 1530 Ciona intesti...
EJD73903      186 LYKALKCQIERGPVDAItgdaryslneskllrkplnvtsmqlfvipldgskqspiilralncdtitqvkkklldsiysne 265  Loa loa
Feature 1                                                                                         
3HM6_X        299 kgvpltqrpdprtldvewrsgvaghlilsd-------------------------------------------------- 328  human
XP_003382745 1496 tdsvsqtkeklldfiygnrpvskrpsiaevelelcrgnagiplkd----------------------------------- 1540 Amphimedon qu...
XP_002112670 1484 arpsvaefeleavtvrhgqppyrlpmfdedssnev--------------------------------------------- 1518 Trichoplax ad...
Q626H5       1424 ysqrpritqfelklkcakrgdikltdvs---------------------------------------------------- 1451 Caenorhabditi...
ADY40164     1452 pfsmritaeqfdlewrcprrgsml-------------------------------------------------------- 1475 pig roundworm
CBY24850     1628 veyskrdsvadydleyvdnslkvplrrlmknvdssseikd---------------------------------------- 1667 Oikopleura di...
EGD75945     1668 dfdtrvlvlqreeglrvlkdiddsskmsa--------------------------------------------------- 1696 Salpingoeca s...
CCD79353     2069 knkpyskqikstqlelkrldeqrviaqnpenelfigqtlsdwdvkirsnpsnstdhdklpvrlnciadyhlkdnahvslv 2148 Schistosoma m...
XP_002119656 1531 dkpysecpkpddldfalmnssestgitl---------------------------------------------------- 1558 Ciona intesti...
EJD73903      266 pfsarlnvdefhlewkcser------------------------------------------------------------ 285  Loa loa
Feature 1                                                                                         
3HM6_X            --------------------------------------------------------------------------------      human
XP_003382745      --------------------------------------------------------------------------------      Amphimedon qu...
XP_002112670      --------------------------------------------------------------------------------      Trichoplax ad...
Q626H5            --------------------------------------------------------------------------------      Caenorhabditi...
ADY40164          --------------------------------------------------------------------------------      pig roundworm
CBY24850          --------------------------------------------------------------------------------      Oikopleura di...
EGD75945          --------------------------------------------------------------------------------      Salpingoeca s...
CCD79353     2149 tceftksnhsqsisnglrpnafqpqptvtqnscfsvdefvhtppmsrplppisssgttmsfknntdqimtiinptlnahi 2228 Schistosoma m...
XP_002119656      --------------------------------------------------------------------------------      Ciona intesti...
EJD73903          --------------------------------------------------------------------------------      Loa loa
Feature 1                                                                                         
3HM6_X            --------------------------------------------------------------------------------      human
XP_003382745 1541 --------------------------------------------------------------------------qdttsr 1546 Amphimedon qu...
XP_002112670      --------------------------------------------------------------------------------      Trichoplax ad...
Q626H5            --------------------------------------------------------------------------------      Caenorhabditi...
ADY40164          --------------------------------------------------------------------------------      pig roundworm
CBY24850     1668 ------------------------------------------------------------------------------gl 1669 Oikopleura di...
EGD75945          --------------------------------------------------------------------------------      Salpingoeca s...
CCD79353     2229 ssdqlhmpkfstpsdepfcfrpvgtpdpklwyhlewkgnhndnimdasgtikkstkrldkrsdnldrllcicthnvhdsh 2308 Schistosoma m...
XP_002119656      --------------------------------------------------------------------------------      Ciona intesti...
EJD73903          --------------------------------------------------------------------------------      Loa loa
Feature 1                                                                                         
3HM6_X        329 ---------edvtsevqglwrrlntlqhykvpdgatvalvpcltkhvlrenqdyvpgertpmledvdeggirpwhlvkps 399  human
XP_003382745 1547 regewmrintlghfnilemaeaaiadpkkpiprfrltarnqtlspgrpvsgavgydvpgtivasasitsqtsllasvnsp 1626 Amphimedon qu...
XP_002112670 1519 ----yengwyklntighykitdnttlklhrvynrnsdtfsisttyqytrpsrnqlharynnvsnqvtlggnkenlsqplp 1594 Trichoplax ad...
Q626H5       1452 -----------avetlsqkklpvklltladygiqdgatlemtsavytaesyrnsladsgqsswssldrcspiyssskyyh 1520 Caenorhabditi...
ADY40164     1476 --------------lsdddgmlfktnrklncisdygitnnallsmqpalsrtyagssydtstqstntgcqtatanrtlhy 1541 pig roundworm
CBY24850     1670 rrlntvehyqklflpnakkldftdkrylelkpststtmlgqshqsgsslsrsrinvsehpsssnmtgtmgrsgtplhgei 1749 Oikopleura di...
EGD75945     1697 ---------gwvqlntasfygmrdgdqlafvksdtdggdarrrrnnnssssggggggggggslfkvrtksksridpmace 1767 Salpingoeca s...
CCD79353     2309 vnnclcnkgdvstrdlnknkvtkmcsgcttrhpllspsevnslknhatllsvnkskrfkkwkkhhnrlnykrdtselsvf 2388 Schistosoma m...
XP_002119656 1559 -----------sdvdgmsvvdgkytkintlkhynvpdnavvvlrphdvenqapqdvsspllppkhmyhlinpseeeqsng 1627 Ciona intesti...
EJD73903      286 ------------------ytvvladddgleegkikrlkclddynikenallamklipsrntpeyfkkaanskgsthptqy 347  Loa loa
Feature 1                                                                                         
3HM6_X        400 depepprprrgslrggereraKAIPEIYLTRLLSMKGTLQKFVDDLFQVILSTSRp---VPLAVKYFFDLLDEQAQQHGI 476  human
XP_003382745 1627 sfdtntrlfhlvkpeanegdqKIVSEVFLTRLLSTKRIIQSYVDDLFHAIFSVPAgk-sLPRAIKIVFDFLDAQAAENGI 1705 Amphimedon qu...
XP_002112670 1595 nqvrekafhlmkhsdsnttneRILPEAFLMCLLLTKGTLQQYTQDLFESLFTLPHhsntFPLAIKYLFDFLNSQASQMQF 1674 Trichoplax ad...
Q626H5       1521 ltnpssgtmtfkkrtspseipKSIPEVYLTRLLTSKGTVETYVEDFLESVLYMHDs--sYPPILKFFFDILDREASINGV 1598 Caenorhabditi...
ADY40164     1542 yhlesspekgatvskldqsipKSIPEVFLTRLLTSKGTVQKFVDDFVDSVLFTSQn--dFPVVLKYVFELFDEIATRNNF 1619 pig roundworm
CBY24850     1750 vrdgrqiidyhhvydgissrkMAAPDHFTLTMIRAKESLETPIQVLIESIVSVVDrqyqMPMCIKYMFDFLDDEFQKVEQ 1829 Oikopleura di...
EGD75945     1768 pwhlvkpdtdgtaaaaaaaatRVPSEIFLTYLMTVKTALQPFVDDLVDAVFNIDQ----PSPAVRFLFHFLDDQARKHNI 1843 Salpingoeca s...
CCD79353     2389 kgeknalmpsetsksldhlmeTLPKEVFFNRLLLTRLSVTKYMDKLFEVMFSSVVqshsLPAPIKYLFDFLDDKAIKLGV 2468 Schistosoma m...
XP_002119656 1628 ytdvqsdagkkademldnlmkRPFQEMFLTRMVKAKTTIQEYVDGVFNSILRPKP----ISKTVRYFFQFLDREADRHKI 1703 Ciona intesti...
EJD73903      348 yhleqpflienctneeddtatKSISEIYLTRLITSKRMVQKFVDGFLESVICANGf--eCPPLLLFVFHTFDEIAIRNNF 425  Loa loa
Feature 1                #       ##  ##                           #      # #        ##            
3HM6_X        477 sdqDTIHIWKTNSLPLRFWINIIKNPQFVFDVQts--dNMDAVLLVIAQTFMDACTLADHkl--grDSPINKLLY-ARDI 551  human
XP_003382745 1706 tdpEILHTWKTNTLPLRFWVNLIKNPDFVFDINks--aTIDACFTVIAQAYIDACSTAEVry--tkDTPSARLLY-ANEV 1780 Amphimedon qu...
XP_002112670 1675 ndpAVVKSWKNNTLPLRYYINIIRNPQFLFDIDks--pIVDSCLSVISQAFGDACSVSDTkv--skDSPSNRLLY-AREI 1749 Trichoplax ad...
Q626H5       1599 s-eNICQQWKANGYVLRMWTNFVKNPQLVFDVPhs--vSMDANLSTVAQTMMDCFSFSEPvl--gaHSPSSRLLF-AKDV 1672 Caenorhabditi...
ADY40164     1620 tdaAVIRAWKTNAWILRFWVNVISNVDFLLDVQrt--pAVDASLAVVAQTLVDAFSISRPtl--gkESPSSKLLF-AKDI 1694 pig roundworm
CBY24850     1830 rhpDTIHKWKTNSLFLRYWVNLIKNPEFLFDINks--pAVSNSLTVVAQTLIDGCSTTESdpllaqAQSTSKVLFsKSVH 1907 Oikopleura di...
EGD75945     1844 sdpRTTHIWKSNAFPLRFWINLIKNPDFLLHVQqt--rTVSSGLSTVAQVIMDSCSVSDQql--gkHSPANKHLY-RKEV 1918 Salpingoeca s...
CCD79353     2469 hdsKIIHAWKSNCIQMRFWNQFITNLDYIFDVPllrntALERSFHAFSHAMTYACAPNKEki--tkDSSCVKLLF-APDI 2545 Schistosoma m...
XP_002119656 1704 ndpEVLHIWKTNSLLLRYWVNVLKNPEFVFDLNkt--dIVDSCLNVITQAFMDACTTTNRkl--ghDSPSNKLLY-AKDA 1778 Ciona intesti...
EJD73903      426 mdeIAVRSWKVNLWILRFWVNILSNIDYVLDVEri--pAVDSSLAVIAQTLVDVFSNANHkf--gkESPSSKLLF-AKDI 500  Loa loa
Feature 1                                                                                         
3HM6_X        552 PRYKRMVERYYADIRQtvpaSDQEMNSVLAELSWNysg--------dlgARVALHELYKYINKYy-DQIITALEEDGtaq 622  human
XP_003382745 1781 KQYKEEVLQYYRDIMAqpqpTAEDNKSYFQEMAENyfqsfeskeglhfhSDSALLEIYRYAIQYg-DDIMETLTEERltl 1859 Amphimedon qu...
XP_002112670 1750 PRYRDKVAEFYKSIQNlptvSEKEMMKEMKLLSETlkd--------dldKSSALLQLYDYAYSNi-KAFEDNLRNANl-- 1818 Trichoplax ad...
Q626H5       1673 ARLRPLSVDLFKRVKNspplGMEELRTELVNMANDvst--------ckgSSLALSELLSWVRGNg-IRISQLLSSNQets 1743 Caenorhabditi...
ADY40164     1695 ERYQSTVGVFFRRIKAapnvSAKQLFEHVTALSNVrge--------pvsGRGVTSELLAWVRGNg-LRLVEVLSADPcsr 1765 pig roundworm
CBY24850     1908 NNFREWVQSYFEEVRMreeiPRDDFILFLREENELhmh--------dfnKNFAIRELFNYAKEYy-NDLLTGLNNDRech 1978 Oikopleura di...
EGD75945     1919 AEYKQKIANFYTAISRlpppTDAELQASFASAQSGeqa---------cdRPDAVCGLMEYALRFr-EQLLEELVAVGhkp 1988 Salpingoeca s...
CCD79353     2546 SQQWNRVHNYYREIKAlptvEQETMNSLLRQHSQNhst--------dfnVSWAVFELYTKYVRNyqDMLIAHLQQDAitr 2617 Schistosoma m...
XP_002119656 1779 DNYKVMVKEFFINISNtptvTQEEVTQILQKQSASyas--------rfnQMVALNGIYEHLVKYr-EQVMEALSTSDnev 1849 Ciona intesti...
EJD73903      501 KRYRIQVADFFRNIATsprlSIETFYSYIAVSAESfcg--------ekiHYVLQNDLYDWIKSNg-FSLLEQFSINQcae 571  Loa loa
Feature 1                                               
3HM6_X        623 -------------------------kmQLGYRLQQIAA 635  human
XP_003382745 1860 mg---------------------aqfnSLRQKYNVNSS 1876 Amphimedon queenslandica
XP_002112670 1819 --------------------------vHLFDVFVNRVV 1830 Trichoplax adhaerens
Q626H5       1744 -------------------------qqRLPQKLSQVLH 1756 Caenorhabditis briggsae
ADY40164     1766 -------------------------qhRLADRLQQIIQ 1778 pig roundworm
CBY24850     1979 qr---------------------kfgaTLSRCISMSAS 1995 Oikopleura dioica
EGD75945     1989 madd-----------------varvlgMFAHRGSIVAS 2009 Salpingoeca sp. ATCC50818
CCD79353     2618 sygnhkiseqnpfeksftstntewnpvQIIQILIEIKR 2655 Schistosoma mansoni
XP_002119656 1850 -------------------------vrDVGTKLDEIFR 1862 Ciona intestinalis
EJD73903      572 trgite-------------clkyllyyGEIDMNHIYAD 596  Loa loa

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