2WPD,1E79,2XND


Conserved Protein Domain Family
F1-ATPase_epsilon

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cd12153: F1-ATPase_epsilon 
Click on image for an interactive view with Cn3D
eukaryotic mitochondrial ATP synthase epsilon subunit
The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes, and in chloroplast thylakoid membranes. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits (only found in eukaryotes, lacking in bacteria) with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain.The epsilon subunit is thought to be involved in the regulation of ATP synthase, since a null mutation increased oligomycin sensitivity and decreased inhibition by inhibitor protein IF1.
Statistics
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PSSM-Id: 213396
Aligned: 41 rows
Threshold Bit Score: 41.8598
Created: 22-Dec-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
gamma subunitdelta subunit
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:gamma subunit interface [polypeptide binding site]
Evidence:
  • Structure:2WPD; Saccharomyces cerevisiae F1C10-ATP synthase, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ##   ####  ##   #                 ###########
2WPD_I         2 AWRKAgISYAAYLNVAAQAIRSSLKTELQTasvLNRSQTDAFYTQY 47  baker's yeast
Q6YW12        10 FWRAAgMTYIGYSNVCAALVRRCLKEPHKSe-aASREKVHFAISKW 54  Oryza sativa Japonica Group
XP_001702609   8 FYRVAgMSYVRYANLCADYLRAVMKEPFKTk-aLARQTVYFRSTPV 52  Chlamydomonas reinhardtii
XP_001769942  16 YWRTAgMTYLSYANTCAAMVRNCLKEPFKSk-aLQREHAYYKFQPY 60  Physcomitrella patens subsp. patens
XP_002183665  65 FWRMAgMSYLQYVNKAATSMRGALKEPAQRk-aMEQEAFAYKVSTW 109 Phaeodactylum tricornutum CCAP 1055/1
CBJ32778       7 FWRLAgMTYLEYASKATTVMRGALKEPARSt-aLAREAVGYNRNVF 51  Ectocarpus siliculosus
XP_002965449   5 YWRVAgMTYMSYANACATHLRKCLKEPYKTq-tAAREQVHYKITKW 49  Selaginella moellendorffii
EFN52734      10 YWRVAgMTYLKYSNLCADMVRAALKEPVKAk-aKAREIIYFRQSLW 54  Chlorella variabilis
XP_003080312  11 YWRIAgMSYLKYANACGEIVRQSLKEPFLSq-vRDDDGREGWRSNE 55  Ostreococcus tauri
EGZ28480       8 LWRMAgVSYLQYVNKSAGVLRAALKEPVKSt-vEARSNVEFAGFKW 52  Phytophthora sojae

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