3MGJ,3MGJ


Conserved Protein Domain Family
SDH_N_domain

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cd12144: SDH_N_domain 
Click on image for an interactive view with Cn3D
Saccharopine dehydrogenase N-terminal domain
SDH N-terminal domain is named due to its appearance at the N-terminal of SDH in eukaryotes, but can be found C-terminal of the SDH-like domain in other enzymes, such as the bifunctional lysine ketoglutarate reductase/saccharopine dehydrogenase enzyme. SDH catalyzes the final step in the reversible NAD-dependent oxidative deamination of saccharopine to alpha-ketoglutarate and lysine, in the alpha-aminoadipate pathway of L-lysine biosynthesis. SHD is structurally related to formate dehydrogenase and similar enzymes, having a 2-domain structure in which a Rossmann-fold NAD(P)-binding domain is inserted within the linear sequence of a catalytic domain of a related structure.
Statistics
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PSSM-Id: 213387
Aligned: 57 rows
Threshold Bit Score: 93.3619
Created: 6-Sep-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
homodimer
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:homodimer interface [polypeptide binding site]
Evidence:
  • Structure:3MGJ: Methanocaldococcus jannaschii Saccharopine dehydrogenase N domain homodimer, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  ####               #        ##                                         
3MGJ_B          4 REIELRGHIIDSLILPKVFDKILDxGGDYKVLEFEIGKRK-------TDPSYAKILVIGrderhVDEILNELRDLGAeip 76   Methanocaldoc...
XP_001777036  452 RYVSLSGHLFDQHLINEALDVICAgGGRYRLATCKLGQSD-------DETSCADLEVTAgsqdaLNCIVDKLAEIAVkgs 524  Physcomitrell...
EEC49157      170 IVLLLEGHLFDSGFINQVLDVIKGnGCAIEFQECTFPTQSae---rkSAKSLVILSIPGsdaaaLGKVESKIHILAQvi- 245  Phaeodactylum...
XP_002286419  464 ILLRIEGHLFDSGLINNVLDVIENqDCPFDIEECTVKRTVng----vATKSILMMRVFSdddekLGNVLKKITLLLDli- 538  Thalassiosira...
EFJ23172      451 TKVSLSGHLFDKFLINEALDVIEAaGGKFQIATCQIGQTC-------DAISYAEIEVAAeseenLSRIVDALSTMATrst 523  Selaginella m...
EFJ25171      443 TKVSLSGHLFDKFLINEALDVIEAaGGKFQIATCQIGQTC-------DAISYAEIEVAAeseenLSRIVDALSTMATgst 515  Selaginella m...
XP_002906594  464 TCVLLEGHLFDTGLINQVLNLIEDhDGGFHLLDCEVRPNVgvgdsgdSTSSNAIVQISMsdreaLDAIITKIRSLAElt- 542  Phytophthora ...
CCA26703       47 CCVRLKGHLFDTGLINKVLDLVELeHEDFHLLDCKIRPSNfdg--atSSISSAILRLTAekkehLEAIKRKIHDLCSfv- 123  Albugo laibac...
BAK00969      478 TLVSLCGHLFDKFLINEALDIIETaGGSFHLVKCDVGQSI-------DDMSYSELEVGAddtttLDKIIDSLTSVANahr 550  domesticated ...
EGZ28379      464 TCLLLEGHLFDTGLINQVLNLIEDhDGGFHLVDCEVRPNIaagdsgfSTVSNAIVQVSMsdraaLDDIIAKIRSLADlt- 542  Phytophthora ...
Feature 1                                                                               
3MGJ_B         77 ----eiEEVELQPAEKDx--------VLPEGFYSTTNHKTf-----------------IRFKGLEHHHHH 117  Methanocaldococcus jann...
XP_001777036  525 ----niRHRELEGSRDIs-------eSNENGIALEKNYQVl-----------------ILGAGRMCEPAV 566  Physcomitrella patens s...
EEC49157      246 ----ekAEATITRVDHQ---------RMDDNFTQTLVNVE------------------VPNISKRILVLG 284  Phaeodactylum tricornut...
XP_002286419  539 ----dsADASMQHFDNRl-------qSKPSSSQNRVTVLGere-------------qnILLLGAGKVASS 584  Thalassiosira pseudonan...
EFJ23172      524 genhcsEKASVVSEYRNililgagrmCEPTLMYLTENAFEdyadtskppkqvfvhvgsLYLEDASKVVEG 593  Selaginella moellendorffii
EFJ25171      516 genhcsEKASVVSEYTNililgagrmCEPTLMYLTENAFEdyadtskppkqvfvhvgsLYLEDASKVVEG 585  Selaginella moellendorffii
XP_002906594  543 -----sGAKATVTELPD---------LCGTDYSKTRGVVRk-----------------DAAANTMAEVSV 581  Phytophthora infestans ...
CCA26703      124 ----qeANALMTDVDESsh-----sqTSKQTDSKRSSKPKk----------------aILCLGSGLVASP 168  Albugo laibachii Nc14
BAK00969      551 ---gdpNAAEISLKIGR---------VSECGIDDSMDKVGp----------------kVLILGAGRVCRP 592  domesticated barley
EGZ28379      543 -----sGAKAIVTELPD---------LCGTNYSKTRGAVVr----------------kDAAANTAADVSV 582  Phytophthora sojae

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