1UHC


Conserved Protein Domain Family
SH3_DNMBP_C2

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cd12141: SH3_DNMBP_C2 
Click on image for an interactive view with Cn3D
Second C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba, and similar domains
DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. The C-terminal SH3 domains of DNMBP bind to N-WASP and Ena/VASP proteins, which are key regulatory proteins of the actin cytoskeleton. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 213017
Aligned: 8 rows
Threshold Bit Score: 113.363
Created: 15-Jun-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #  #   #                     ##            # ##   
1UHC_A         15 VYFAVYTFKARnpnELSVSANQKLKILEFKDVtGNTEWWLAEVNGKKGYVPSNYIRK 71   human
Q6XZF7       1517 VYFAVYTFKARnpnELSVSANQKLKILEFKDVtGNTEWWLAEVNGKKGYVPSNYIRK 1573 human
XP_421697    1120 VYYALYTFKGRntnELSVSANQRLRILQFEDItGNREWWLAEAHGKQGYVPSSYIRK 1176 chicken
CAG12598     1350 IYYALYSFKARcsnELSISANQRLRILEFQDMnGNSDWWLGEADGRRGYVPSNYIRK 1406 spotted green pufferfish
XP_002934822  715 IFYAVYAFEARsqqELSLQENQRVRILQFSDQsGNKEWWLGEAHGQKGYVPANYLGK 771  western clawed frog
XP_002937226 1485 VYYAVYTFKSRspnELSVSANQRVNILEFRDMnGNGEWWLAEVEGRRGYVPSNYIRK 1541 western clawed frog
CAG11488      410 QFYAVYAFQARsdqELTLQEYQHVRILQFSDLgGNKDWWLAECNGQRGYVPANYLGK 466  spotted green pufferfish
XP_426302     721 TFYAVHAFQARsdqELSLQEYQKVRILRFSDLsGNKEWWLAEAKGQKGYVPSNYLGK 777  chicken

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