1BB9,1MUZ,1MV3


Conserved Protein Domain Family
SH3_Bin1

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cd12139: SH3_Bin1 
Click on image for an interactive view with Cn3D
Src Homology 3 domain of Bridging integrator 1 (Bin1), also called Amphiphysin-2
Bin1 isoforms are localized in many different tissues and may function in intracellular vesicle trafficking. It plays a role in the organization and maintenance of the T-tubule network in skeletal muscle. Mutations in Bin1 are associated with autosomal recessive centronuclear myopathy. Bin1 contains an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR) and a C-terminal SH3 domain. The SH3 domain of Bin1 forms transient complexes with actin, myosin filaments, and CDK5, to facilitate sarcomere organization and myofiber maturation. It also binds dynamin and prevents its self-assembly. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 213015
Aligned: 7 rows
Threshold Bit Score: 134.272
Created: 26-Jun-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Structure:1MV3: Human Bin1+12A splice variant SH3 domain binds intramolecular proline-rich sequence; contacts at 4A.
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #######                  # ####                      # ##    
1BB9_A        43 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKEsdwnqhkelekCRGVFPENFTERV 114 Norway rat
1MUZ_A         9 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKEsdwnqhkklekCRGVFPENFTERV 80  human
1MV3_A       141 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKEsdwnqhkklekCRGVFPENFTERV 212 human
O00499       521 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKEsdwnqhkelekCRGVFPENFTERV 592 human
NP_001080791 406 FLYKVRAQHDYTATDGDELELKAGEVVLVTQFENPDEQDDGWLMGIKEtdwlqskpfeqHRGVFPENFTEKN 477 African clawed frog
NP_001006524 370 FLFKVQAMHDYTATDSDELQLKAGDVVLVIPFENPEEQDEGWLMGVKEsdwiqhkeldqCRGVFPENFTERV 441 chicken
NP_001004602 294 VLFKVKTMHDYSATDSDELDLKAGDIVLVLPFANPDEADDGWLMGVKEshwlq-nknllAKGVFPENFTQKL 364 zebrafish

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