1B33,1ALL,2V8A,2VJT,1KN1


Conserved Protein Domain Family
APC_beta

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cd12126: APC_beta 
Click on image for an interactive view with Cn3D
Allophycocyanin beta subunit of the phycobilisome core
Phycobilisomes (PBSs) are the main light-harvesting complex in cyanobacteria and red algae. In general, they consist of a central core and surrounding rods and function to harvest and channel light energy toward the photosynthetic reaction centers within the membrane. They are comprised of phycobiliproteins/chromophorylated proteins (PBPs) maintained together by linker polypeptides. PBPs have different numbers of chromophores, and the basic monomer component (alpha/beta heterodimers) can further oligomerize to ring-shaped trimers (heterohexamers) and hexamers (heterododecamers). Stacked PBP hexamers form both the core and the rods of the PBS; the core is mainly made up by allophycocyanin (APC) while the rods can be composed of the PBPs phycoerythrin (PE), phycocyanin (PC) and phycoerythrocyanin (PEC).
Statistics
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PSSM-Id: 271281
Aligned: 17 rows
Threshold Bit Score: 246.482
Created: 13-Oct-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 23 residues -Click on image for an interactive view with Cn3D
Feature 1:chromophore binding site [chemical binding site]
Evidence:
  • Structure:1ALL: Spirulina platensis allophycocyanin beta subunit binds phycocyanobilin; contacts at 4 A
  • Citation:PMID 7783202
  • Comment:Cys-84 is the conserved attachment site present in cyanobacterial and red algal phycobiliproteins, and in the beta-subunits of cryptophyte biliproteins. The actual position of the central conserved Cys varies from positions 81 to 84.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                #     #     ##   ##  
1B33_B      1 MQDAITAVINSSDVQGKYLDTAALEKLKSYFSTGELRVRAATTIAANAAAIVKEAVAKSLL-YSDITRPGGXMYTTRRYA 79  Mastigocladus lami...
1ALL_B      1 MQDAITSVINSSDVQGKYLDASAIQKLKAYFATGELRVRAATTISANAANIVKEAVAKSLL-YSDVTRPGGXMYTTRRYA 79  Arthrospira platensis
2V8A_B      1 MQDAITAVINASDVQGKYLDTAAMEKLKAYFATGELRVRAASVISANAANIVKEAVAKSLL-YSDITRPGGXMYTTRRYA 79  Thermosynechococcu...
2VJT_B      1 MQDAITAVINNYDVQGKYLDGAALDKLKAYFTTGAVRVRAAAVISSNATTIIKEAAAKALI-YSDLTRPGGXMYTTRRYA 79  Gloeobacter violaceus
1KN1_B      1 MQDAITSVINSSDVQGKYLDSSAIEKLKGYFQTGELRVRAATTIAANAANIIKEAVAKSLL-YSDITRPGGNMYTTRRYA 79  Porphyra yezoensis
P51215      1 MQDAITAILNRYDLTGRYLDKAAVTQLESFFSSGLDRIKIAEIINNQATNILKEASAQLYEeQPELLRPGGNSYTTRRYA 80  Porphyra purpurea
P34812      1 MQDTITNILNKYDLTGKYLDNNALTQITTYLNTALQRLEVVEIIQSQSSKIIKEAAARMYSeQPELLRPGGNSYTTRKYA 80  Aglaothamnion negl...
NP_848971   1 MQDQISKIIRRYDFAGQYLDTKAINKVASYFQNAMERLQVVQVLQQDAVDIIKEASNALFTsQPELLRPSGNAYTTRRYA 80  Cyanidioschyzon me...
O19896      3 LQDSIVNIISTYDNAGKYLDSNAITNIKKYFDTADTRLGIVKIINANSSLIIQQASSQLFErNPELIRPSGNAYTTRRYA 82  Cyanidium caldarium
EDX83641    1 MQDTITSLINPADEKGQYLEGGDLDSLKQYLQSGATRVKAAGQIGDSAASIISKTVERSLL-YGDITLPGGNMYPTRRYA 79  Synechococcus sp. ...
Feature 1     ## ### ##  #               ##   #   #  # ##  ##                                 
1B33_B     80 ACIRDLDYYLRYATYAMLAGDPSILDERVLNGLKETYNSLGVPISATVQAIQAMKEVTASLvgp-----daGKEMGVYFD 154 Mastigocladus lami...
1ALL_B     80 ACIRDLDYYLRYATYAMLAGDPSILDERVLNGLKETYNSLGVPIGATVQAIQAMKEVTAGLvgg-----gaGKEMGIYFD 154 Arthrospira platensis
2V8A_B     80 ACIRDLDYYLRYATYAMLAGDPSILDERVLNGLKETYNSLGVPIAATVQAIQAMKEVTASLvga-----daGKEMGIYFD 154 Thermosynechococcu...
2VJT_B     80 ACIRDMDYFLRYATYAMLAGDPSILDERVLNGLKETYNSLGVPIAATVGGIQAMKEVVGGLvgp-----daAKEASIYFD 154 Gloeobacter violaceus
1KN1_B     80 ACIRDLDYYLRYATYAMLAGDPSILDERVLNGLKETYNSLGVPIGATIQAIQAMKEVTSGLvgp-----daGKEMGLYFD 154 Porphyra yezoensis
P51215     81 ACLRDIEYYLRYTSYALIAGNTNILDQRVLNGLKDTYNSLSVPLAPTVRSIQLLQEIIEEElelq--sitrKDIVQEPFQ 158 Porphyra purpurea
P34812     81 MCLRDIEYYLRYATYAIIAGNNDILNERVLDGLKDTYNSLNVPIAPTVRSIQIMEEIIHNEiskqdlkiikKSIISEPFD 160 Aglaothamnion negl...
NP_848971  81 ACLRDLEYYLRYAIYAILAGDMSILNERVLTGLADTYNSLGVPIGPTIIGINQLKEAAKKRi--------nSPYIDEVFD 152 Cyanidioschyzon me...
O19896     83 ACLRDIDYYLRYASYSIVANDTSVLSSRVLAGLKDTYNSLGVPLASIVTLLELLKELIKEKtkni---ndaHKYIDEPFL 159 Cyanidium caldarium
EDX83641   80 ACLQDLTYFLRYATYAMLADDASIIDERILNGLKDTYSSLGVPVEPTIQAIEAMKDVVSERvgt-----eaGQEVGKYLD 154 Synechococcus sp. ...
Feature 1           
1B33_B    155 YICSGL 160 Mastigocladus laminosus
1ALL_B    155 YICSGL 160 Arthrospira platensis
2V8A_B    155 YICSGL 160 Thermosynechococcus elongatus
2VJT_B    155 YLSSGL 160 Gloeobacter violaceus
1KN1_B    155 YICSGL 160 Porphyra yezoensis
P51215    159 HLINAL 164 Porphyra purpurea
P34812    161 HMIQNL 166 Aglaothamnion neglectum
NP_848971 153 HMIKNL 158 Cyanidioschyzon merolae strain 10D
O19896    160 YMMKIL 165 Cyanidium caldarium
EDX83641  155 HIIAGL 160 Synechococcus sp. PCC 7335

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