3E38


Conserved Protein Domain Family
PHP_HisPPase_Chlorobi_like

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cd12112: PHP_HisPPase_Chlorobi_like 
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Polymerase and Histidinol Phosphatase domain of Chlorobi like
The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. Chlorobi PHP is uncharacterized protein. HisPPase catalyzes the eighth step of histidine biosynthesis, in which L-histidinol phosphate undergoes dephosphorylation to produce histidinol. The HisPPase can be classified into two types: the bifunctional Hisppase found in proteobacteria that belongs to the DDDD superfamily and the monofunctional Bacillus subtilis type that is a member of the PHP family. The PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination. The PHP domain of HisPPase is structurally homologous to other members of the PHP family that have a distorted (beta/alpha)7 barrel fold with a trinuclear metal site on the C-terminal side of the barrel.
Statistics
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PSSM-Id: 213996
Aligned: 13 rows
Threshold Bit Score: 343.542
Created: 2-Mar-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitedimer interface
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:Two-domain protein containing predicted PHP-like metal-dependent phosphoesterase binds 3 metal ions
  • Comment:The active site of PHP is characterized by a trinuclear metal cluster liganded by histidines, aspartate and glutamate.
  • Structure:3E38; Bacteroides vulgatus HisPPase PHP domain binds 3Zn2+ ions

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         # #    #                        #                              
3E38_A         7 EIQVPDLDGYTTLKCDFHXHSVFSDGLVWPTVRVDEAYRDGLDAISLTEHIEYRPHKQDVv------------------- 67  Bacteroides vul...
ZP_02033064   42 HIAVPDLPGYKTLKCDFHLHTYYSDGHVTPEMRVLEAWAEGLDAISITDHQPVPRSHTETk------------------- 102 Parabacteroides...
ZP_08845460   39 EIQLPDIPGYKTLKCDFHMHTIFSDGIVWPATRVREAWEEGLDAISITDHIEHRPHREYVk------------------- 99  Anaerophaga the...
ZP_09021115   42 LIRVPDIPGYTTLKCDFHIHSAYSDGSVWPDVRVNEAWNEGLDAIAITEHIEYRPRVKEGlv------------------ 103 Alistipes indis...
YP_004737144  28 PMSYPDIEGYKTLKTDLHQHTVFSDGKVWPTIRVQEALRENLDAISLTEHLEYQPHKEDIph------------------ 89  Zobellia galact...
YP_001821448  36 RIEFPNVGNYQTLVCDFHQHTVFSDGSVWPNIRVQEAERDGLDAIAVTDHLEYQPHASDIph------------------ 97  Opitutus terrae...
ZP_06200534   41 YIYIPDVEGYKTLKCDFHTHTIFSDGDIKPENRVWEAAIRGLDVIAITDHIEYRPNKDYIk------------------- 101 Bacteroides sp....
ZP_07213831   33 RIEIPGFGNYETLKCDFHTHTVFSDGLVWPDARIYEAWQEGLDAIAITDHIEHRINKDVLk------------------- 93  Bacteroides sp....
YP_003060864  27 ISFPNTADGGVLLTADLHTHTVFSDGAVWPSIRVEEAHRDGLDALAITEHLEHQPKAADIpn------------------ 88  Hirschia baltic...
ZP_03702780   23 PPFFKAKSGSHWVSTDLHIHTVFSDGAVWPSIRVEEARKEGLDLIAMTEHLEYQPHAEDIph------------------ 84  Flavobacteria b...
ZP_01617145   59 LIQFPDTANYKTLVLDPHTHSSFSDGHVWPRIRVEEALRDGLDAIAITEHLEWQPHMADLph------------------ 120 marine gamma pr...
CBK64181      44 EFILPEVNGYNVYKADLHTHSVYSDGDCTPEFRVREAWYDGLDVLAITEHVEYRRHEGKMlnflkgyvpegteainnnii 123 Alistipes shahi...
NP_808944     16 FILPDSIEGYIPLKADLHLHTYFSDGHLSPSARVREAWLDGLDAISVTDHIEYHPADTDMigylgatlpdgiea----hn 91  Bacteroides the...
Feature 1                                              #         #                               
3E38_A        68 ----------sDHNRSFDLCREQAEKLG---ILLIKGSEITRa-xAPGHFNAIFLSDSNPLEQk---------------- 117 Bacteroides vul...
ZP_02033064  103 -----------DCNVSYNKAFPMAESKG---ITLIKGLEITGs-dPVGHLNVLFIKDCNDYMPkkrn------------f 155 Parabacteroides...
ZP_08845460  100 ----------gNHNSPYEIALPVAEQKD---IILIRGGEITRd-mPPGHLNGLFLEDVNALDTp---------------- 149 Anaerophaga the...
ZP_09021115  104 ---------cgDQNQSYKIAAEAGERMG---ILVVPGAEITRq-kPFGHMNAFFLTDANALDTd---------------- 154 Alistipes indis...
YP_004737144  90 ----------pDRNRSYALALAEAKSHN---LLIVHGSEITRs-aPVGHNNAIFIKDANQLNVd---------------- 139 Zobellia galact...
YP_001821448  98 ----------pDRNRGFVIATEAAAKTK---VLVLRGAEVTRa-mPPGHCNAIFLQDVNGLLVe---------------- 147 Opitutus terrae...
ZP_06200534  102 ----------aDHNESYKRAKTVEKASN---LIVIQGAEITRs-kPIGHINALFLTDANALDVe---------------- 151 Bacteroides sp....
ZP_07213831   94 ----------gDLNKSYKIAKKAADDMD---FIVIPGAEITRf-kPLGHLNALFVQDVNLMEKe---------------- 143 Bacteroides sp....
YP_003060864  89 ----------pDRNRSYDVAVESLVGAGyngLLIIRGAEVSRn-mPPGHVNAVFLEDANALLVk---------------- 141 Hirschia baltic...
ZP_03702780   85 ----------pDRNRSYTIASGMIQPEEr--LQVINGSEITRe-mAPGHINAVFIKDANALLYa---------------- 135 Flavobacteria b...
ZP_01617145  121 ----------pDRNRAYQIAREANGDNP---LMIIAGSEITRe-tPSGHINALFITDANKMLLpiaapepfdpieyyrrm 186 marine gamma pr...
CBK64181     124 rrsadergiqsDLNLPVKLARETARKYG---LTIIPGAEITRepiAYGHYNALFTTDNNSLYAt---------------- 184 Alistipes shahi...
NP_808944     92 vnkktnvkpkqDLNKSVELTKKAAVSYG---LLIIPGIEITRepkGIGHYNALFTTDNNGIYDp---------------- 152 Bacteroides the...
Feature 1                              #                                                         
3E38_A       118 ---DYKDAFREAKKQGAFXFWNHPGWDSQQPDttk-wwPEHTALYQEGCXHGIEVANGHLYXp--EAIQWCLDKNLTXIG 191 Bacteroides vul...
ZP_02033064  156 setEADSLIEKAAAEGAYITTNHPGWPDKNSEl----pAYIVRHIEQKRIQGIEIFNNEEFYp--RAIDYADQYNLAYIG 229 Parabacteroides...
ZP_08845460  150 ---DPEDAVRAAINQGGFVLWNHPGWKAQQPDtcv-wmDMHQDWYEKGYIHGIEVFNEKEWYp--IVIDWCLDKELAMIG 223 Anaerophaga the...
ZP_09021115  155 ---DPVQAVENAVKQGAFIMWNHPGWPDRQVTm----yDVHRKLIDEGKIHGIELINGPEYHp--KAIAWCKENRLAYMC 225 Alistipes indis...
YP_004737144 140 ---KAEKAFSEAKKQGAFVFWNHPAWYAQSPKgtpilsDFQEKRIKKGELHGIEVINTVDYSe--EALTLALENDLTIMG 214 Zobellia galact...
YP_001821448 148 ---DPLAAFREAARQGAFVFWNHPSWIKQTPDgvarltPLHEQLLNEGLIQGIEVMNEHEFSd--ESLQLALDRNLTIMG 222 Opitutus terrae...
ZP_06200534  152 ---DPLRAVDNALEQGAFIMWNHPGWPNDTSTl----yNVHKDLIKQKKIHGIEVVNGFEYYp--KAFNYCKEYGLTYMG 222 Bacteroides sp....
ZP_07213831  144 ---NPVESIAEAKRQGAFIVWNHPGWPDHRATl----yPIHEQLIQEDMIDGIEVMSYKDFYp--IALEWCSCFKKAFMA 214 Bacteroides sp....
YP_003060864 142 ---DYMDAFEAAKEQGAFIFWNHPNWIPQAPDgvaritEMHKDLISKGLLHGIEVANGTLDGhseHALQIALDYNLTVLG 218 Hirschia baltic...
ZP_03702780  136 ---DSLSGIQAANKQGAFVFWNHPNWDAHRKDgiarldPFHEYLIENKLLHGLEVVNETTYSd--EAFQIALENNLTILG 210 Flavobacteria b...
ZP_01617145  187 hqfPEQDAVDAAVEQEAFLFWNHPWWHTDYVAdipiipEFHRKNAANGKIQGIEIANGFNYSe--QAFQMALDLDLAVIG 264 marine gamma pr...
CBK64181     185 ---DALQSLRNAKAQGALVMHNHPGWRRKSLEh----pEFEVKAYGEGLIDGIEIMNGAEFYp--KAIARAHARKLFVSA 255 Alistipes shahi...
NP_808944    153 ---DPLTAIRNAKAQGALVMHNHPGWRRESIQh----pDFELKAYGEGLIDGIEANNGTAFCp--GTIDRAKEDNLFVAS 223 Bacteroides the...
Feature 1          # #                                               
3E38_A       192 TSDIHQPIQTDYDFEkgehrTXTFVFAKer--sLQGIREALDN-RRTAAYFH 240 Bacteroides vulgatus ATCC 8482
ZP_02033064  230 ATDAHYPMDFLFDLKk---kFRTLTFVFakentPESIKEALYAgRSIAYADQ 278 Parabacteroides merdae ATCC 43184
ZP_08845460  224 NSDIHDVNAHYYDVEng-hrPMTLVFATer--tQQAIKEAMFDrRTIAWFDD 272 Anaerophaga thermohalophila DSM 12881
ZP_09021115  226 GSDAHQLITGKYGLSrm-prPMTLVFAKer--sVGGIKEALFA-RRSAVMFH 273 Alistipes indistinctus YIT 12060
YP_004737144 215 TSDIHGLIDWDYTEKgn-hrPITLVFAEdk--tMEGLKEALFAgRTVAVYND 263 Zobellia galactanivorans
YP_001821448 223 NSDIHGLIDWAHDVPagghrPVTLVFAQer--sEAALKEALLA-RRTAVWFT 271 Opitutus terrae PB90-1
ZP_06200534  223 NTDIHGVYKQTYRTDk---qSGPMTIVFakersQEGVKEALLAgRSVVKFGD 271 Bacteroides sp. D20
ZP_07213831  215 SSDAHCVLSGIYRKG-----LRPLTLVFseersEKGIREALFVgRTAALFDG 261 Bacteroides sp. 20_3
YP_003060864 219 TSDIHGLVDWTHNAGhgghrPMTIVLAEer--sEEALKKALFEgKTVAWNYD 268 Hirschia baltica ATCC 49814
ZP_03702780  211 TSDIHGLTDWAHSISegghrPMTFVSVEsk--tPMALKKALFEgKTVVWYDA 260 Flavobacteria bacterium MS024-2A
ZP_01617145  265 ASDVHELIDWDYKPHegghrPVTLVLAEna--tADSLREALFE-HRTLVWFN 313 marine gamma proteobacterium HTCC2143
CBK64181     256 NTDIHDATAETYRLQg---hSRNMTLIFarnnsLEALREALEArRTLAYSFG 304 Alistipes shahii WAL 8301
NP_808944    224 TTDLHDTSFEEYIGRg---lRRDMTIILakdrsLDAMRDALEN-RRTIGYGA 271 Bacteroides thetaiotaomicron VPI-5482

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