3DCP,2YXO


Conserved Protein Domain Family
PHP_HisPPase_Hisj_like

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cd12110: PHP_HisPPase_Hisj_like 
Click on image for an interactive view with Cn3D
Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase of Hisj like
Bacillus subtilis YtvP HisJ has strong histidinol phosphate phosphatase (HisPPase) activity. The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. HisPPase catalyzes the eighth step of histidine biosynthesis, in which L-histidinol phosphate undergoes dephosphorylation to produce histidinol. The PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination. The PHP domain of HisPPase is structurally homologous to other members of the PHP family that have a distorted (beta/alpha)7 barrel fold with a trinuclear metal site on the C-terminal side of the barrel.
Statistics
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PSSM-Id: 213994
Aligned: 165 rows
Threshold Bit Score: 179.68
Created: 1-May-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitedimer interface
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:The active site of PHP is characterized by a trinuclear metal cluster liganded by histidines, aspartate and glutamate.
  • Structure:3DCP; Listeria monocytogenes HisK PHP domain binds Zn2+ and 2Fe3+ ions

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # #     #                         #                                          
3DCP_A         3 RDGHTHTEFCPHGThdDVEEXVLKAIELDFDEYSIVEHAPLSsefxkntagdkeavttasxaxsdlPYYFKKXNHIKKKY 82  Listeria monocy...
CBQ74001       4 SHHSHSGQFCSHAKd-SLAAVLHRAHALGFTHFHLSEHMPRQhhselypeelea-sitpqklrdtfEAYLMEARRLQIEY 81  Sporisorium rei...
CCA76022       4 SHHSHSGQFCSHGAd-TLELIVAEAARKGFKMYALTEHCPRYcdsdlypeeiea-kvslqdleetfAKFIAEGTRLRDLY 81  Piriformospora ...
XP_001745240   7 SVHSHSGQFCSHARd-SLAEIVHTAHERGFSHYGLSEHMPRAnpaflypeeiea-glgpkelaeqfESYVQEARRLQQAY 84  Monosiga brevic...
EGD74673       3 FSYHSHSGQFCKHAaeTLEANVLAAIELGFTHLGLSEHMPRYcdehlypeekel-gmtpadleqqfDAYVQEARRVKAKY 81  Salpingoeca sp....
YP_002604316  27 VHGGHSGQFCLHARd-RLEDMVKRYVELGFTWVGITEHLPAWgekvmypdevaa-qltpdqmlitfGAYILECNRLKKKY 104 Desulfobacteriu...
ZP_01312183   11 AHGGHSGQFCLHARd-TLAEMVEEYARQGFSWVGLTEHMPPTedaflypderea-gltarylqdqfSRYVDTARQLQQEY 88  Desulfuromonas ...
YP_003159911   6 LHGGHSGQYCDHARd-TLADIVEAYHLAGFECVGLSEHMPPFgdaglypdevel-grsagwmearfALYVAEARELARNY 83  Desulfomicrobiu...
O14059         4 SSHSHSGQFCLHAQg-KLEDVIQEAIQQGFQSFSFTEHTPRDrvedlypeelh---lqpedlfktfDEYVNEARRLKQNY 79  Schizosaccharom...
XP_002113027   3 FSYNSHSGQFCQFGkgHLESCVLRAIEIGYAYFGMSESMPRYkeeqlykeeak---ktvqflqenfEKYIREARRLQHHY 79  Trichoplax adha...
Feature 1                     #                                        #                         
3DCP_A        83 As---DLLIHIGFEVDYLIGyedftrdf-----------lneygpqTDDGVLSLHFLEGqggfrsidfsaedy------- 141 Listeria monocy...
CBQ74001      82 Aa--kHMQVLVGCETENITSpesldyltevlgsdagtkpevvgkgvVDYIVGSLHHTHAipidfdretfdr--------- 150 Sporisorium rei...
CCA76022      82 AsnesGMEILIGLETECLRTedldkleq----------linkynadIDFIVGSVHHADEhpidfskerfedaitsfqtql 151 Piriformospora ...
XP_001745240  85 Ag---RLSIAVGMETEFCEPgslkaar------------elrqqhnLDYIVGSVHHVDGiaidfdaaq------------ 137 Monosiga brevic...
EGD74673      82 Ad---KIHLVIGFETEMCRPesvadal------------hlmqkysLSYCVGSVHHVNGvpidfdept------------ 134 Salpingoeca sp....
YP_002604316 105 Rs---SIKIFTAFEIETCSGygtyvpq-------------mvsrfkPDYIVGSVHHVNDqgfdfskdq------------ 156 Desulfobacteriu...
ZP_01312183   89 Rd---RLTLFVGMETEYYPGsldfakq-------------lrtefgLDYLVGSVHHVDGrcfdfslad------------ 140 Desulfuromonas ...
YP_003159911  84 Kd---RMRILVGMESEWYPGcarwvad-------------lrryhgLDYVVGSVHHVKGvcfdfsrda------------ 135 Desulfomicrobiu...
O14059        80 Gd---QINILIGAETEYIRPesvellk------------slntkynLDYFVGSVHHVNSipidfspelw----------- 133 Schizosaccharom...
XP_002113027  80 Ke---HIKLLVGMETFYFGAdsiqdin------------dsrqhfnPDYVVGMVRHIRGipidinnds------------ 132 Trichoplax adha...
Feature 1                                                 #                                      
3DCP_A       142 --negivqfyggfeqAQLAYLEGVKQSIEADLGLFKPRRXGHISLCQKFqqffgedtsdfSEEVXEKFRVILALVKk--- 216 Listeria monocy...
CBQ74001     151 ---svasfdssssadAHVQLIDQYLDDQLEVLQRLKPEVVGHFDLFRLFtpql----elrEPHIWAKVQRNVRFAVe--- 220 Sporisorium rei...
CCA76022     152 pepstdtqsedfrqgALSKLLESYFTSQRTLMERLRPQVIGHFSLPLLFtpqt---rlasHPRALQLAKANIEFGVs--- 225 Piriformospora ...
XP_001745240 138 ------maraeqqagGPTALAVRYFEHVRTMIEALQPTVVGHFDLFRLFrg--------eIPLTGPVLDAALRALTagle 203 Monosiga brevic...
EGD74673     135 ------iarvekqlgSTEALFVRYFELVKEMIEGIKPAVVGHFDLIRLLrpq-----qplTERILAAADAAINAAVk--- 200 Salpingoeca sp....
YP_002604316 157 ------yletatglgGIDTLYEQYFDLQYEMFRTINPAVAGHFDLIRIFddnyg--srlkKPAIWQKIVRNLGYIKq--- 225 Desulfobacteriu...
ZP_01312183  141 ------yqdafdqhgGYEPLYCAYFDAQLAMINELQPEVVGHFDLIRLHdhdyp--trlqCPAVEQRIRRNLHRISe--- 209 Desulfuromonas ...
YP_003159911 136 ------ydkasaicgGTSRMYAAYFDEQLEMLRETRPEVVGHFDLIRLHdpdyl--qtlaLPEVWERVMCNLEWLRd--- 204 Desulfomicrobiu...
O14059       134 ------qkalqhvgnNPEQLFIDYFEHQYDLMQRLHPLVIGHFDLICLFapedakevfknSKSVWELIQRNIKYAVs--- 204 Schizosaccharom...
XP_002113027 133 ------ftkaeeavgNTEELFCEYFDCQYELVTKTHPEVVGKFDLIYTFrkn-----felTEVIWEKIDRNIRYIAe--- 198 Trichoplax adha...
Feature 1                                                 # #              
3DCP_A       217 RDYELDFNTAGLFKplcgETYPPKKIVTLASElQIPFVYGSDSHGVQDIGRGYSTYCQ 274 Listeria monocytogenes str. 4b H7858
CBQ74001     221 YGALFECNAAAFRKgw-sTSYPAQDVLHLILSlHGRLCLSDDSHGVHAVALNYLRLRQ 277 Sporisorium reilianum SRZ2
CCA76022     226 YGALFELSSAPFRKgw-dEGWPGEEAVKMVLDmGGKFCLSDDAHKVEQVGLNYHRLLA 282 Piriformospora indica
XP_001745240 204 HDCIFEINTSGLRKgl-pGPYPHADLLKMMLErGARLTISDDAHGTAQVGTNYGRLRQ 260 Monosiga brevicollis MX1
EGD74673     201 HNCLFEINTAALRKgl-qGPYPHADLALRIAQrGARFTISGDSHCPDFVATCYAALPA 257 Salpingoeca sp. ATCC50818
YP_002604316 226 QDIVMDYNLRALTKga-vEPYIAAPILELARAmEIRVVPGDDSHGVRDIGQHIDPAID 282 Desulfobacterium autotrophicum HRM2
ZP_01312183  210 LGLILDYNARALFKga-qEPYVSVPVLHHALQlGIDLLPGDDSHGVDSVGAHLATVIA 266 Desulfuromonas acetoxidans DSM 684
YP_003159911 205 AGAILDINARALLKgq-pEPYVCAPILDAAAKlGIGVAYGDDAHGVADVGYGFEQVEE 261 Desulfomicrobium baculatum DSM 4028
O14059       205 YGGIFEINTSAFRKgw-kTAYPQQRLLELMVEqGAQLTLSDDSHGPHQVGLNYHLAKS 261 Schizosaccharomyces pombe 972h-
XP_002113027 199 YGGLFEINSKALTTel-dDPYPQRHILRRIIAlGGHVTLSDGSYGPTEVGMFYSSLQA 255 Trichoplax adhaerens

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