4F9K,4DIN


Conserved Protein Domain Family
DD_RIbeta_PKA

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cd12102: DD_RIbeta_PKA 
Click on image for an interactive view with Cn3D
dimerization/docking (D/D) domain of the Type I beta Regulatory subunit of cAMP-dependent protein kinase
cAMP-dependent protein kinase (PKA) is a serine/threonine kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active subunits. There are two classes of R subunits, RI and RII; each exists as two isoforms (alpha and beta) from distinct genes. These functionally non-redundant R isoforms allow for specificity in PKA signaling. RI subunits are pseudo-substrates as they do not contain a phosphorylation site in their inhibitory site unlike RII subunits. RIbeta is expressed highly in the brain and is associated with hippocampal function. The R subunit contains an N-terminal dimerization/docking (D/D) domain, a linker with an inhibitory sequence, and two c-AMP binding domains. The D/D domain dimerizes to form a four-helix bundle that serves as a docking site for A-kinase-anchoring proteins (AKAPs), which facilitates the localization of PKA to specific sites in the cell. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis.
Statistics
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PSSM-Id: 438523
Aligned: 8 rows
Threshold Bit Score: 91.1569
Created: 25-May-2012
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interfaceputative AKAP
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Comment:The Dimerization/Docking (D/D) domain of RIbeta dimerizes to form an X-type four-helix bundle .
  • Structure:4F9K; Human RIbeta D/D domain forms a homodimer, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              ##  #   # #  ##   #  ##  ####### ##  ## ##  ##  
4F9K_A        33 EDESLKGCELYVQLHGIQQVLKDCIVHLCISKPERPXKFLREHFEKLEKEENRQ 86  human
NP_001070091  10 EDESLKGCEVFVQKHNIQQILKECIVNLCIAKPERPMKFLREHFEKLEKEECKQ 63  zebrafish
XP_414754     11 EDESLKGCELYVQKHNIQQILKECIVNLCIAKPDRPMKFLREHFEKLEKEECKQ 64  chicken
NP_001072922  10 EDESLKGCEVYVQKYNIQQLLKECIVNLCIAKPDRPMKFLREHFEKLEKEECKQ 63  western clawed frog
XP_005997021  13 EDESLKGCELYVQKHNIQQILKECIVNLCITKPDRPMKFLREHFEKLEKEECKQ 66  coelacanth
4DIN_B        11 EDESLKGCELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEKLEKEENRQ 64  human
P31321        11 EDESLKGCELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEKLEKEENRQ 64  human
NP_001279723   8 EDESLKGCEFYVQKHNIQQILKECIVSFCLAKPDRPMKFLKEHFEKLEKDEYKQ 61  elephant shark

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