Conserved Protein Domain Family
FANCM_ID

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cd12091: FANCM_ID 
Insert domain of FANCM and related proteins
FANCM and related proteins, like Mph1 and Fml1, are DNA junction-specific helicases/translocases that bind to and process perturbed replication forks and intermediates of homologous recombination. FANCM contains an N-terminal superfamily 2 helicase (SF2) domain, although FANCM, in contrast to other members of this family, does not exhibit DNA helicase activity. The SF2 helicase domain is comprised of 3 structural domains, the 2 generally conserved helicase domains and a helical domain inserted between the two domains. FANCM is a component of the Fanconi anaemia (FA) core complex. FA is a rare genetic disease in humans that is associated with progressive bone marrow failure, a variety of developmental abnormalities, and a high incidence of cancer. A key role of this complex is to monoubiquitination of FANCD2 and FANCI during S-phase and in response to DNA damage. The role of FANCM during this process seems to be the recruitment of the complex to chromatin.
Statistics
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PSSM-Id: 277190
Aligned: 70 rows
Threshold Bit Score: 56.5328
Created: 22-May-2012
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative
Feature 1:putative helicase domain interface [polypeptide binding site]
Evidence:
  • Comment:based on similarity to other family members with structure; the helical_insert_domain contacts the most C-terminal of the two helicase structural domains of the SF2 domain

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     # ##
NP_001107132  269 THYQTRYLQVLERFSSRLTqmrllnqrdlrafskYQIILAREQFRRNppphiqgpqqQGVLEGDFALLISLYHGFELLLQ 348  zebrafish
CBJ30312      325 DAIRQSLVDVLQPLVNRMAskrvlfsrdpmalkaWTVLQSLHAFRRSvheng-nehiAGEVEAEMGVLTKVMQAKDTLVT 403  Ectocarpus si...
EGG22416      520 QELVELINKCKWKPYDIIKrsipylvefqklsiyYVINMMQNQKHTNnpr-----gpDWPSINNLGVLRALLDCSNELIK 594  Dictyostelium...
EER32377      297 EECIDMLATAIEPVLKTANerglldltdptkinfFQCNELSRKMTANpsip---eglKWSNYFILQLLGIVGQCYRRLNI 373  Candida tropi...
EGV60029      340 TNCLIHTANAAEPYIKMANerhlfqssdpndlymFKLLEITKRNLLNnnls---eglKWQNHFLLKLLLFKANCIKKLKI 416  Candida tenui...
CAY68405      297 TAYTELICEAIAPIYEQCVkyqifepmgvakinaFQAREASQKVQGNprlp---egtKWMYFFLLQLLITAGESFRRLSV 373  Pichia pastor...
A3GH78        294 KECIDLLCTAIAPVLKVANgkgileitdpsrinfFQCMDASRKIVANptip---egtKWSNFFTLQLLGVVGQCFRRLNV 370  Pichia stipit...
Q6BRF0        293 CELVDMLCTAIQPVLSMANerriydmsdpskinaFQVIDASQRLLKNptip---eglKWQNYFILQILNVVGQALRRLNI 369  Debaryomyces ...
A6ZVS0        293 EDIIEQLGIAVKPVLQQAIelgiyeecdpsqinaFKAMQQSQKIIANptip---egiKWRNFFILQLLNNVGQMLKRLKI 369  Saccharomyces...
EEQ36931      265 VDAIDMICQAIEPILETANqrkiyeitdpakinaFAALDAQQKIIKNpnip---eglKWSNYFILQLLVVVGQCFRRLNI 341  Clavispora lu...
Feature 1         ##      #                                   
NP_001107132  349 MGIRSLFLFIQNIFTGpre-------ssrVRNELQRCSLFMDLY 385  zebrafish
CBJ30312      404 HGVAGCLHKLENMEKEvkvrg----irsnAERGVFRHEAWPGLM 443  Ectocarpus siliculosus
EGG22416      595 HGLVCFKNKLKIFADNtk----------kCYKETLDSTYWKLLV 628  Dictyostelium fasciculatum
EER32377      374 YGIRYFYEYFHEKFTEfktkw----nakkSTNKLNADFYFSDTI 413  Candida tropicalis MYA-3404
EGV60029      417 YGFNNFKAYFNDTRTKvlas------knkMMLELFSSAPVKELV 454  Candida tenuis ATCC 10573
CAY68405      374 YGVVAFYSYFKEKYDEfttkweakksknkHAHSFYYHPAIKQLL 417  Pichia pastoris GS115
A3GH78        371 YGLRSFFSYFNEKYTEfmakhskkkssnkLNADFYFSEPIKQLM 414  Pichia stipitis CBS 6054
Q6BRF0        370 YGIKSFYNYFDQKHKEftikfknkksnnqTAARFYFHDNIKLIL 413  Debaryomyces hansenii CBS767
A6ZVS0        370 YGIRTFFNYFQNKCTEfttkynlkkstnkIAAEFYYHPILKNIK 413  Saccharomyces cerevisiae YJM789
EEQ36931      342 YGIRSFYSYFYDKYTEfstkynnkkstnhLAAKFYFHSSIKGLL 385  Clavispora lusitaniae ATCC 42720

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