4A2W,2YKG,3TMI,3TS9,4A2Q,3TBK,4A2P,4ON9,4GL2,3ZD6,4AY2,4BPB,3ZD7,4I1S


Conserved Protein Domain Family
MDA5_ID

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cd12090: MDA5_ID 
Click on image for an interactive view with Cn3D
Insert domain of MDA5
MDA5 (melanoma-differentiation-associated gene 5, also known as IFIH1), as well as RIG-I (Retinoic acid Inducible Gene I, also known as DDX58) and LPG2 (also known as DHX58), contain two N-terminal CARD domains and a C-terminal SF2 helicase domain. They are cytoplasmic DEAD box RNA helicases acting as key innate immune pattern-recognition receptor (PRRs) that play an important role in host antiviral response by sensing incoming viral RNA. Their SF2 helicase domain is comprised of 3 structural domains, the 2 generally conserved helicase domains and a helical domain inserted between the two domains. The inserted domain is involved in conformational changes upon ligand binding.
Statistics
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PSSM-Id: 277189
Aligned: 27 rows
Threshold Bit Score: 138.99
Created: 22-May-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Structure:3TMI, human Rig-I helicase_repressor domain (RD) with bound RNA, 4.5A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                 ##  #   #                              
4A2W_A       474 NPFAAIISNLMSETEALMRtiayvdtl-sqnskkdFGTQNYEHWIVVTQRKCRLlqledkeeesriCRALFICTEHLRKY 552  mallard
3TMI_A       239 DKFKYIIAQLMRDTESLAKrickdlenlsqiqnreFGTQKYEQWIVTVQKACMVfqmpdkdeesriCKALFLYTSHLRKY 318  human
AEK21509     227 DPFGQRLKKIMAQIQEHMEmpel---------pqnFGTQVYEQRIVELENRAAEr----------fCRKTRVCALHLRRY 287  chicken
NP_001085915 228 DPFGDKLKELMKTIHEYLRttdf--------cesdFGTQLYEQKVVELEKEGAVe----------aNRMKRTCALHLRKY 289  African clawed...
EAW60800     227 DPFGDLLKKLMDQIHDHLEmpel---------srkFGTQMYEQQVVKLSEAAALa----------gLQEQRVYALHLRRY 287  human
NP_001244086 229 DPFGDHLKSMMLMIHEFMPptvsr-------glreLGTQEYEADVVELEKAGVKv----------nNRLIAQCALHLRKY 291  zebrafish
EEN59673     233 DPFGDELKKMMQKIHRMIDmegpge----rgppadFGTQMYEQWVVEMEKQGQCmk---------sNRCVQTCAEHLRKY 299  Florida lancelet
EDO44279     211 VTGGVPERKVMDKIEKAAKkslpdl----qqppcnRVSQQYRQWIEVISKQACAl----------gLRQLTTYIEQLRQY 276  starlet sea an...
EEN66299     461 DPFRETVERMMTEIEGLLPpdlql------qysgpKGVQEYQSAVDLVNGKATNe----------rNTEVIHQCDHLLNY 524  Florida lancelet
ADI75503     230 DPFGNHLKRMMQMIQDYMNlptsd------frlreCGTQEYEADVVILEQRGIRe----------dNRRLAQCALHLRQY 293  bastard halibut
Feature 1                                                                  
4A2W_A       553 NDALIISEDARIIDALSYLTEFFTNvkngpyt--eleqhlTAKFQEKEPELIALSKDE 608  mallard
3TMI_A       319 NDALIISEHARMKDALDYLKDFFSNvraagfd--eieqdlTQRFEEKLQELESVSRDP 374  human
AEK21509     288 NDALLINDTVRMMDAFQCLQQFYADkrdtkd---pterflATTFEENRATLQALAGDQ 342  chicken
NP_001085915 290 NDSLLVHDTVRMMDAYELLDDYYQQekvirkqndptdaflIQLFDGNRARLLELAQDV 347  African clawed frog
EAW60800     288 NDALLIHDTVRAVDALAALQDFYHRehvtktqilcaerrlLALFDDRKNELAHLATHV 345  human
NP_001244086 292 NDALLINDTIRMVDAFRVLEEFYNSrssklld--gtdiflQGLFDENSLELKHLASDA 347  zebrafish
EEN59673     300 NDALVINDTLRMSDAFQYLKEFYTKesdrqdgfdetdrklASIFSGRQYSFFHLEKLT 357  Florida lancelet
EDO44279     277 HLALLTNDTVRMKDALTCLKEYFDTldet-------kfteNDKLLHNLYHKNHVAIHG 327  starlet sea anemone
EEN66299     525 NKALQMNNTARMKDAMEILTYFYDKlkqrhki-svverrlLDLFEAKSNQLRPISQRE 581  Florida lancelet
ADI75503     294 NDALLINDTLLMMDAYRNLEEFYISkstraid--ktdfflVGIFQDNQADLMKVARDS 349  bastard halibut

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