2KYG,2IZX,7JTK,1L6E


Conserved Protein Domain Family
DD_RII_PKA-like

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cd12084: DD_RII_PKA-like 
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dimerization/docking (D/D) domain of the type II Regulatory subunit of cAMP-dependent protein kinase and similar domains
cAMP-dependent protein kinase (PKA) is a serine/threonine kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active subunits. There are two classes of R subunits, RI and RII; each exists as two isoforms (alpha and beta) from distinct genes. These functionally non-redundant R isoforms allow for specificity in PKA signaling. The R subunit contains an N-terminal dimerization/docking (D/D) domain, a linker with an inhibitory sequence (IS), and two c-AMP binding domains. RI and RII subunits are distinguished by their IS; RII subunits contain a phosphorylation site and are both substrates and inhibitors while RI subunits are pseudo-substrates. RI subunits require ATP and Mg ions to form a stable holoenzyme while RII subunits do not. The D/D domain dimerizes to form a four-helix bundle that serves as a docking site for A-kinase-anchoring proteins (AKAPs), which facilitates the localization of PKA to specific sites in the cell. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis.
Statistics
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PSSM-Id: 438517
Aligned: 45 rows
Threshold Bit Score: 39.3264
Created: 21-Dec-2011
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interfaceAKAP
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Comment:the Dimerization/Docking (D/D) domain of R subunits dimerizes to form an X-type four-helix bundle
  • Structure:2IZX: Human RIIalpha D/D domain forms a homodimer; contacts at 4A.
  • Structure:1L6E: Mus musculus RIIalpha D/D domain forms a homodimer; contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #  ##  ##  ##  ## #### ##  ##  #
2KYG_A        11 IPPGLTELLQGYTVEVLRQQPpDLVEFAVEYFTRLR 46  human
2IZX_A         3 IPPGLTELLQGYTVEVLRQQPpDLVEFAVEYFTRLR 38  human
Q7Z7H3       320 QHPEAHALISDFLLFLLLRQPeDVVTFAAEFFGPFD 355 human
XP_001452630  12 AQENVVFLLQRLMEDILAQQPkNVIDWSIAWLDKKG 47  Paramecium tetraurelia strain d4-2
CCC50274      21 HSHNVRGMLERLIADVILERPeNACEYFSKWAARQR 56  Trypanosoma vivax Y486
ESL06637      16 ERVGMRDLLETFVAEVVRQKPhDLYDFLHRWASARC 51  Trypanosoma rangeli SC58
KPI88623      16 ERIDMRSILQGLVADAMTDRPiDVFEYMGSWAAGKM 51 
CUI15476      48 QSHNIHILLDRMVKDILVETPkDSDAWMLRWFLEQH 83 
CUG61545      16 VDKGIAQLLEKFMADVIESRPdDVLGFLKQWSTEKY 51  Bodo saltans
RHW70139      16 ERIGVGPLLEDFVADAVREKPnDVYEFLRQWATARC 51  Trypanosoma brucei equiperdum

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