1V1C


Conserved Protein Domain Family
SH3_Obscurin_like

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cd12025: SH3_Obscurin_like 
Click on image for an interactive view with Cn3D
Src homology 3 domain of Obscurin and similar proteins
Obscurin is a giant muscle protein that is concentrated at the peripheries of Z-disks and M-lines. It binds small ankyrin I, a component of the sarcoplasmic reticulum (SR) membrane. It is associated with the contractile apparatus through binding with titin and sarcomeric myosin. It plays important roles in the organization and assembly of the myofibril and the SR. Obscurin has been observed as alternatively-spliced isoforms. The major isoform in sleletal muscle, approximately 800 kDa in size, is composed of many adhesion modules and signaling domains. It harbors 49 Ig and 2 FNIII repeats at the N-terminues, a complex middle region with additional Ig domains, an IQ motif, and a conserved SH3 domain near RhoGEF and PH domains, and a non-modular C-terminus with phosphorylation motifs. The obscurin gene also encodes two kinase domains, which are not part of the 800 kDa form of the protein, but is part of smaller spliced products that present in heart muscle. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212958
Aligned: 6 rows
Threshold Bit Score: 113.822
Created: 1-Feb-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of p47phox tandem SH3 domains to p22phox-derived peptides
  • Comment:SH3 domains bind proline-rich ligands, preferentially to PxxP motifs.
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 # #       ##                ###                # # ##   
1V1C_A           5 FDIYVVTADYLPLgaeQDAITLREGQYVEVLDAAHPLRWLVRTKPTksspSRQGWVSPAYLDR 67    human
O01761          65 YPVYIAIQDYTPDkedVEAIPLEQGQIVEVLDKKNSVRWLVRTKARp---PRSGWVPGSYFET 124   nematode
XP_002739915  2491 FDIYMAVADYTPDtaeTEDIPLVEGQYVDVLDSNSATKWLVRTKPTklhaPKQGWVRASYLEK 2553  Saccoglossus kowalevskii
XP_003374402   458 LPVYIVTQDFNPDvsnTDALPLEEGQIVEVLDSKNASSWLVRTKARp---PKIGWAPGTLFET 517   Trichinella spiralis
AAH91815       121 FDIYVVTADYNPMgvsKDVIALKEGQYVEVLDSAHPLKWLVRTKPTksnpSRRGWVSPAYLDK 183   zebrafish
XP_418501     6899 FDVYMVTADYVPAapdKETITLKEGQYVEVLDSAHPLKWLVRTKPTksspSRQGWVSPAYLDK 6961  chicken

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