1OV3,1WLP


Conserved Protein Domain Family
SH3_p47phox_1

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cd12021: SH3_p47phox_1 
Click on image for an interactive view with Cn3D
First or N-terminal Src homology 3 domain of the p47phox subunit of NADPH oxidase, also called Neutrophil Cytosolic Factor 1
p47phox, or NCF1, is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), a polybasic/autoinhibitory region, and a C-terminal proline-rich region (PRR). This model characterizes the first SH3 domain (or N-SH3) of p47phox. In its inactive state, the tandem SH3 domains interact intramolecularly with the autoinhibitory region; upon activation, the tandem SH3 domains are exposed through a conformational change, resulting in their binding to the PRR of p22phox and the activation of NADPH oxidase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212954
Aligned: 5 rows
Threshold Bit Score: 107.735
Created: 2-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Structure:1WLP; Human p47phox tandem SH3 domains bind p22phox proline-rich peptide; contacts at 4A.
  • Structure:1OV3; Human p47phox tandem SH3 domains swapped dimer binds two p22phox-derived peptides; contacts at 4A.
  • Comment:SH3 domains bind proline-rich ligands, preferentially to PxxP motifs.
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #     ##                ###          # # ##   
1OV3_A        13 TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEP 65  human
1WLP_B        12 TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEP 64  human
NP_001025880 160 TYRAIADYEKSSKSEMAVKAGDAVDVVEKSETGWWFCQLKTKRGWVPAAYLEP 212 chicken
CAM16641     162 TYRVIADYSKSSKYELTLKMGDMVDIVEKSPNGWWFCQCESRRGWVPASYLEP 214 zebrafish
NP_001106375 162 SYRVIADYEKNSKSELAAKNGDVVEIVEKSENGWWFCQLRNKRGWMPAAYLEP 214 western clawed frog

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