1WIE


Conserved Protein Domain Family
SH3_RIM-BP_1

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cd12014: SH3_RIM-BP_1 
Click on image for an interactive view with Cn3D
First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212947
Aligned: 15 rows
Threshold Bit Score: 115.913
Created: 7-Nov-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #  #          #                  ##             # ##   
1WIE_A         19 LCVARYSYNPF-DGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDF 79   human
NP_497459      42 VFRALFQYLPLrDSPNENPQLELSLQPGDVVLVKGEMDSDGFYCGETLDGRQGLVPSNYVER 103  nematode
XP_002124083  354 VFIAKYTYNPQ-EGPNEHPEAELPLVAGDYVYVCGEIDEDGFFEGELMSGQRGLVPSNFLEP 414  Ciona intestinalis
XP_003381992   31 LFQAKYKYRPLkDSPNDNPELELPLNEGDLVLVCGKMDEDSFYMGELANGRRGLVPSNYVEP 92   Trichinella spiralis
XP_002433325  470 VYVARYSYDPLkQSPNEHPEAELYLNAGDYILIFGDMDEDGFFNGELMDGRKGLVPSNFVLK 531  black-legged tick
XP_001202010   61 VFIARYNYEPSaDSPNDNFDSELPLTAGDYIYVYGDPDEDGFFEGELMDGRRGLVPCNFIER 122  purple urchin
BAJ99763      359 IVVAKYSYEPLrFSPNDHPEIELPLKSGDYYLIYGDVDEDGFYDGRNLEGRYGLIPSNFIEL 420  domesticated barley
EGI57188      570 VYIARFSYEPFqHSPNANPEAELPVQGGDYLLVWGQPDDDGFLDAETLDGRRGLVPANFVQK 631  Panamanian leafcutter ant
NP_077729     597 VFLARYSYNPF-EGPNENPEAELPLTAGEYIYIYGNMDEDGFFEGELMDGRRGLVPSNFVER 657  human
XP_415717     743 VFLARYSYNPF-DGPNENPEAELPLTAGEYIYIYGDMDEDGFFEGELMDGRRGLVPSNFVER 803  chicken

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