1X27,2IIM,4D8K


Conserved Protein Domain Family
SH3_Lck

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cd12005: SH3_Lck 
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Src homology 3 domain of Lck Protein Tyrosine Kinase
Lck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lck is expressed in T-cells and natural killer cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212938
Aligned: 6 rows
Threshold Bit Score: 110.684
Created: 31-May-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the structures of other Src-family tyrosine kinase SH3 domains bound to peptide/protein ligands
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 1280858
  • Citation:PMID 9351809
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #  ##  #                ###            # # ##   
1X27_A         6 LVIALHSYEPSHDGDLGFEKGEQLRILEQs-GEWWKAQSLTTGQEGFIPFNFVAK 59  human
2IIM_A         8 LVIALHSYEPSHDGDLGFEKGEQLRILEQs-GEWWKAQSLTTGQEGFIPFNFVAK 61  human
1170731       64 LVVALYDYEPTHDGDLGLKQGEKLRVLEEs-GEWWRAQSLTTGQEGLIPHNFVAM 117 chicken
NP_001091190  58 QVVALYNYEPMHAEDLGFEAGEKMHILEQk-GEWWKAKSLRTGQVGFIPHNFVAS 111 African clawed frog
NP_001001596  57 LVVAIYKYDPAHSDDLGFEKGEKMKILDCddPEWYMAESLFTGQRGYIPKNFVAK 111 zebrafish
4D8K_A        14 LVIALHSYEPSHDGDLGFEKGEQLRILEQs-GEWWKAQSLTTGQEGFIPFNFVAK 67  human

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