2YSQ


Conserved Protein Domain Family
SH3_ARHGEF9

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cd11975: SH3_ARHGEF9 
Click on image for an interactive view with Cn3D
Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9
ARHGEF9, also called PEM2 or collybistin, selectively activates Cdc42 by exchanging bound GDP for free GTP. It is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. Mutations in the ARHGEF9 gene cause X-linked mental retardation with associated features like seizures, hyper-anxiety, aggressive behavior, and sensory hyperarousal. ARHGEF9 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212908
Aligned: 4 rows
Threshold Bit Score: 101.325
Created: 3-Jan-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative DH-PHpeptide ligand
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:putative DH-PH interface [polypeptide binding site]
Evidence:
  • Comment:based on the structure of autoinhibited human ASEF
  • Comment:In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               ###    ## #                                   #        
2YSQ_A         7 GDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQ 68  human
NP_001155135   5 GGSVVSAEAVWDHVTMAERELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQ 66  zebrafish
AAI36099       5 GGNIVSAEAAWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQ 66  western clawed frog
XP_420291      7 GGSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQ 68  chicken

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