Conserved Protein Domain Family
SH3_Abp1_eu

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cd11960: SH3_Abp1_eu 
Src homology 3 domain of eumetazoan Actin-binding protein 1
Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212893
Aligned: 16 rows
Threshold Bit Score: 84.373
Created: 20-Dec-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
peptide ligand
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of the SH3 domains of human cortactin and yeast Abp1 to peptide ligands
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #  #  ##                 ##           # # ##   
Q6GM14       321 CARALYDYQAADDTEISFDPDDVIIQIEMIDDGWWRGVAPSGHFGMFPANYVEL 374 African clawed frog
7304993      378 CARALYDYQAADDTEISFDPENLITGIEVIDEGWWRGYGPDGHFGMFPANYVEL 431 house mouse
NP_499840    589 NAMALWDYQAADDTEISFDPDDIITDIDQVDSGWWKGRAPSGRVGLFPANYVKL 642 nematode
NP_001018536 366 CARALYDYQAADDTEISFDPDDIITSIEMIDEGWWRGYGPDGHFGMFPANYVEL 419 zebrafish
XP_423673    424 CARALYDYQAADDTEISFDPENIITNIEMIDEGWWRGYGPDGHFGMFPANYVEL 477 chicken
XP_792414    245 TARALYDYQAEDDTEVTFDPGDIITQIEQIDEGWWRGQAPSGEFGLFPANYVEL 298 purple urchin
XP_002157698 551 KAIALYDYQAVDETEISFDPNDIITHIEVIDEGWWRGMNPSGHYGLFPSNYVEE 604 green hydra
XP_002123298 405 SAEAMYDYQAADDTEISFDPGDVITDIEQIDEGWWRGTAPNGSNGLFPANYVTL 458 Ciona intestinalis
XP_002157698 454 TAKALFDYSAADDTEITFLPGDLIINIEFIDDGWWRGTGPDGTYGLFPANYVEL 507 green hydra
CAM16080     116 RVRALYDYQAEDDTELSFEPGDIISDVETIDKAWWRGCSKDGRQGLFPANFVET 169 zebrafish

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