2EPD


Conserved Protein Domain Family
SH3_srGAP4

?
cd11956: SH3_srGAP4 
Click on image for an interactive view with Cn3D
Src homology 3 domain of Slit-Robo GTPase Activating Protein 4
srGAP4, also called ARHGAP4, is highly expressed in hematopoietic cells and may play a role in lymphocyte differentiation. It is able to stimulate the GTPase activity of Rac1, Cdc42, and RhoA. In the nervous system, srGAP4 has been detected in differentiating neurites and may be involved in axon and dendritic growth. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
?
PSSM-Id: 212889
Aligned: 5 rows
Threshold Bit Score: 112.626
Created: 19-Dec-2011
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1               # #  #   #                 ##            # ##   
2EPD_A        10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITL 64   human
P98171       748 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITL 802  human
NP_001123805 744 PIESIARFDYSAQTPQELSFKKGDILLLHGKSTGDWWRGEIAGTLGLIPHKYISI 798  western clawed frog
ACN60285     390 ECEAVAMFDYTARSATELSFKQGDPLLLHSKASSDWWRGEAGGVRGLIPHKYISV 444  Atlantic salmon
NP_956738    704 ELQALALFDYIGRSSTELSFKHGDRFIVYSKASSDWWKGEVNGSKGLIPNKYISV 758  zebrafish

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap