Conserved Protein Domain Family
SH3_ARHGEF5_19

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cd11940: SH3_ARHGEF5_19 
Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF5 and ARHGEF19
ARHGEF5, also called ephexin-3 or TIM (Transforming immortalized mammary oncogene), is a potent activator of RhoA and it plays roles in regulating cell shape, adhesion, and migration. It binds to the SH3 domain of Src and is involved in regulating Src-induced podosome formation. ARHGEF19, also called ephexin-2 or WGEF (weak-similarity GEF), is highly expressed in the intestine, liver, heart and kidney. It activates RhoA, Cdc42, and Rac 1, and has been shown to activate RhoA in the Wnt-PCP (planar cell polarity) pathway. It is involved in the regulation of cell polarity and cytoskeletal reorganization. ARHGEF5 and ARHGEF19 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212873
Aligned: 7 rows
Threshold Bit Score: 107.185
Created: 27-Oct-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
peptide ligand
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #  #   #                 ##              # ##   
Q12774       1514 QVQCLRAYKPRENDELALEKADVVMVTQQSSDGWLEGVRLSDGERGWFPVQQVEF 1568 human
XP_417225    1651 QVQCIRTYKARENDELALEKADIIMVMQYSNDGWMEGVKLSDRERGWFPSEHVEL 1705 chicken
CAF98185      701 QMQCIRAFVAQQPDELSLEKADIILVHQQSSDHWVEGTRLSDRHRGWVPQSHLET 755  spotted green pufferfish
NP_001128552  773 QVQCIKGYTAQEHDELTLEKADILRLTAKTSDGWMEVTRLSDGQRGWVPATHVEE 827  African clawed frog
AAI60596      478 QMLCLKSYKAKENDELSLEKADIIFVRQSSEDGWLQGVRLSDMQSGWFPLSHVQP 532  western clawed frog
CAG01734      448 QVQCIKSYKAQEHDELTLEKADILHAKTITGDGWVEGIRLSDGERGWFPKTYIEE 502  spotted green pufferfish
Q8IW93        719 QVQCVRTYKALHPDELTLEKTDILSVRTWTSDGWLEGVRLADGEKGWVPQAYVEE 773  human

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