1X6B


Conserved Protein Domain Family
SH3_ARHGEF16_26

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cd11938: SH3_ARHGEF16_26 
Click on image for an interactive view with Cn3D
Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF16 and ARHGEF26
ARHGEF16, also called ephexin-4, acts as a GEF for RhoG, activating it by exchanging bound GDP for free GTP. RhoG is a small GTPase that is a crucial regulator of Rac in migrating cells. ARHGEF16 interacts directly with the ephrin receptor EphA2 and mediates cell migration and invasion in breast cancer cells by activating RhoG. ARHGEF26, also called SGEF (SH3 domain-containing guanine exchange factor), also activates RhoG. It is highly expressed in liver and may play a role in regulating membrane dynamics. ARHGEF16 and ARHGEF26 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212871
Aligned: 6 rows
Threshold Bit Score: 94.1401
Created: 27-Oct-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #  #   #                                             ##              # ##
1X6B_A        19 QVEITKAFFAKQADEVTLQQADVVLVLQQe-----------------------------DGWLYGERLRDGETGWFPEDF 69   human
Q96DR7       793 QVEIVRSFTAKQPDELSLQVADVVLIYQRv----------------------------sDGWYEGERLRDGERGWFPMEC 844  human
AAI54875     289 QVEIIKAYLAKQADEISLQQADVMLVLQEe-----------------------------DGWYQGERLRDGERGWFPESC 339  western clawed...
XP_003454865 868 QVEVIRTYTARQPDELSLQMADVVLVWQTv----------------------------eDGWYEGERLRDGERGWFLSEC 919  Nile tilapia
XP_002121290 500 QVLIIKSVRAEEPDMISLKNMDVCVVLYTt----------------------------sDGWIYGERMSDGCRGWFSSGG 551  Ciona intestin...
CAG03207     563 QFEATKAYMPKDPDELSLKQAELVIVFQKeegealvhtaplaspapsslsrglkcpvllAEWCYGERMRDGERGWFPASC 642  spotted green ...
Feature 1           
1X6B_A        70 ARF 72   human
Q96DR7       845 AKE 847  human
AAI54875     340 AKE 342  western clawed frog
XP_003454865 920 AEP 922  Nile tilapia
XP_002121290 552 AKE 554  Ciona intestinalis
CAG03207     643 ATE 645  spotted green pufferfish

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