1UGV


Conserved Protein Domain Family
SH3_GRAF-like

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cd11882: SH3_GRAF-like 
Click on image for an interactive view with Cn3D
Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins
This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Statistics
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PSSM-Id: 212815
Aligned: 14 rows
Threshold Bit Score: 96.5937
Created: 21-Nov-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #  #   #                                      ##              # ##   
1UGV_A         12 KAKALYACKAEhdsELSFTAGTVFDNVHPsq--------------------ePGWLEGTLNg--KTGLIPENYVEF 65   human
NP_082099     787 QAQAMYSCKAEhshELSFPQGAIFSNVHPsv--------------------ePGWLKATYEg--RTGLVPENYVVF 840  house mouse
EGF79790        2 RAVALYSCTAEdpsELSFEVGDLILDVRPtd--------------------eEGWFTGRLEksgLRGNLPGNFVRF 57   Batrachochytrium ...
XP_002116116  573 VARTLYQCKGEydkELSFEANQVIHNGKQrdihvhnsfgsasisstvreseePGWLYGTINd--ETGLIPENYVEI 646  Trichoplax adhaerens
NP_498306     420 RVKTLYACTPDhhsELSFEPGQIITNVYEsn--------------------eDGWLVGTLNg--KTGLIPSNYVEP 473  nematode
AAO39581      800 RVRTLYACMGEsegELSFEPNQIITNVRYsh--------------------ePGWLQGTLNg--KTGLIPENYVEH 853  fruit fly
XP_002120294 1006 LARTLFACEAErdgELSFQPGMLIKQLQPtd--------------------ePGWLRGVLNg--EEGLVPENYVEF 1059 Ciona intestinalis
EGD73656      443 TVRALYNCDAEdeeELTFRRGDLITDVEPfe--------------------dEGWFVGTLQstqQRGLFPYNYVED 498  Salpingoeca sp. A...
EFW40166      827 RAVALYDCVGEdegEISFNEGQTLIDVQPsn--------------------eDGWLEGTNEstnRRGLFPSNYVSF 882  Capsaspora owczar...
XP_003389922  116 RAKALFDCEAEdelELSFREDEIFINVVEse--------------------ePDWLQATNSs-gKRGLVPANYIEW 170  Amphimedon queens...

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