Conserved Protein Domain Family
SH3_SKAP1-like

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cd11866: SH3_SKAP1-like 
Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1 and similar proteins
This subfamily is composed of SKAP1, SKAP2, and similar proteins. SKAP1 and SKAP2 are immune cell-specific adaptor proteins that play roles in T- and B-cell adhesion, respectively, and are thus important in the migration of T- and B-cells to sites of inflammation and for movement during T-cell conjugation with antigen-presenting cells. Both SKAP1 and SKAP2 bind to ADAP (adhesion and degranulation-promoting adaptor protein), among many other binding partners. They contain a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212800
Aligned: 5 rows
Threshold Bit Score: 102.895
Created: 2-Jun-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
peptide ligand
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #  #   #                   ##               # ## 
Q1KKW7       305 YYQGLWDCSADepDELPFQRGDLIYIISKEyniYGWWVGELN---GAVGIVPKDFL 357 torafugu
Q5U597       272 FYRGLWDCTGDhpDELSFKHGDTIYIISKEyntYGWWVGEMK---GTIGLVPKAYI 324 African clawed frog
XP_002405501 314 WYLALWDCLGErgDELSFRRGDMLKVLSREydgQAWWVAKAQgqkGGVGFVPKDYL 369 black-legged tick
XP_785357    414 IYMGMWDCFPNedNELEFQRGDLVHIISKEfdsFNWWVGEKN---SKIGLVPKAYL 466 purple urchin
XP_002612725 434 MYMALWDCSANtvQDLTFKRGDLIQVVSREyesFSWWVGFLD---GKVGLVPKDYL 486 Florida lancelet

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