2DNU,1OV3,1OV3,2EGA,1V1C,2EGC,2EKH,2BTT,1WLP,1WLP


Conserved Protein Domain Family
SH3_p47phox_like

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cd11856: SH3_p47phox_like 
Click on image for an interactive view with Cn3D
Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains
This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212790
Aligned: 45 rows
Threshold Bit Score: 56.1055
Created: 2-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Structure:1WLP; Human p47phox tandem SH3 domains bind p22phox proline-rich peptide; contacts at 4A.
  • Structure:1OV3; Human p47phox tandem SH3 domains swapped dimer binds two p22phox-derived peptides; contacts at 4A.
  • Comment:SH3 domains bind proline-rich ligands, preferentially to PxxP motifs.
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #       ##                ###            # # ##   
2DNU_A        10 KYVTVQPYTSQs--kDEIGFEKGVTVEVIRKnlEGWWYIRYLg--KEGWAPASYLKK 62  human
2EKH_A        10 SYMTCSAYQKVq--dSEISFPAGVEVQVLEKqeSGWWYVRFGe--LEGWAPSHYLVL 62  human
Q8NFA2       167 SLRCLQPFCTQdtrdRPFQAQAQESLDVLLRhpSGWWLVENEd-rQTAWFPAPYLEE 222 human
1WLP_B        12 TYRAIADYEKTs--gSEMALSTGDVVEVVEKseSGWWFCQMKa--KRGWIPASFLEP 64  human
1WLP_B        82 PYVAIKAYTAVe--gDEVSLLEGEAVEVIHKllDGWWVIRKDd--VTGYFPSMYLQK 134 human
EGD82361     622 AYEVMEAYTADn--eSAVSVNKGEVVELLEEsdTGWWFVKKSt-gQEGWAPSDLLKK 675 Salpingoeca sp. ATCC50818
CBY12038      41 QYLVGLSFTAQs--qGELTIEKGDEVTCLFKneSGWWFLEKNn-gDVGWAPASYVDI 94  Oikopleura dioica
CBY38087     166 TYNVRESYKCSedstGEIEIHTGEKVRVLIKdeSGWWFIQKDqsdEEGWVPASHIAF 222 Oikopleura dioica
XP_003382479 204 LYECMAKFVGQad-qYQISLRRGASVTVIEKkeSGWWYVQDEh-gRVGWAPASHLKV 258 Amphimedon queenslandica
EFW43668     305 WYVATEDFAGEn--dEEISFSKGDVVEVLDKdpNGWWFVALEg--EEGWAPSTYLKP 357 Capsaspora owczarzaki ATCC 30864

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