1U3O


Conserved Protein Domain Family
SH3_Kalirin_1

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cd11852: SH3_Kalirin_1 
Click on image for an interactive view with Cn3D
First Src homology 3 domain of the RhoGEF kinase, Kalirin
Kalirin, also called Duo, Duet, or TRAD, is a large neuronal dual Rho guanine nucleotide exchange factor (RhoGEF) that activates Rac1, RhoA, and RhoG using two RhoGEF domains. Kalirin exists in many isoforms generated by alternative splicing and the use of multiple promoters; the major isoforms are kalirin-7, -9, and -12, which differ at their C-terminal ends. Kalirin-12, the longest isoform, contains an N-terminal Sec14p domain, spectrin-like repeats, two RhoGEF domains, two SH3 domains, as well as Ig, FNIII, and kinase domains at the C-terminal end. Kalirin-7 contains only a single RhoGEF domain and does not contain an SH3 domain. Kalirin, through its many isoforms, interacts with many different proteins and is able to localize to different locations within the cell. It influences neurite initiation, axon growth, dendritic morphogenesis, vesicle trafficking, neuronal maintenance, and neurodegeneration. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212786
Aligned: 10 rows
Threshold Bit Score: 100.548
Created: 1-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               # #  #    #                    ##                   # ##   
1U3O_A         18 ELTVVLQDFSAAH-SSELSIQVGQTVELLERPs-eRPGWCLVRTTe---rSPPQEGLVPSSTLCI 77   Norway rat
Q1LUA6       1609 ELTVVIHDFMAGN-SNELTIRRGQTVEVLERLh-dKPDWCLVRTTd---rSPALEGLVPCAMLCI 1668 zebrafish
O60229       1649 ELTVVLQDFSAGH-SSELTIQVGQTVELLERPs-eRPGWCLVRTTe---rSPPLEGLVPSSALCI 1708 human
NP_001123393 1621 ELTVVIHDFTACN-SNELTIKRGQTVEVLERHh-dRPDWCLVRTTd---rSPAAEGLVPSSSLCI 1680 western clawed frog
XP_002737012 1079 ELTIIIEDYEARS-SQELSVKKGQTVEVLERSd-sQSDWYLVRSLsv-enCSTQEGIVPIRTLGA 1140 Saccoglossus kowalevskii
NP_728561     184 EATWVVADYIATSgSNELSVSKGQQVEIVEPPtagEPDFCLVRLNpqhddAAVQEGLVPVSVLKP 248  fruit fly
XP_002598611  667 EVTLVVEDFEATG-SQEITVFKGQTVELLDRPe-nKPEFCLVRTLlt-enSPSAEGLVPNNILAV 728  Florida lancelet
XP_783478    1059 ECGVVVEDFEASS-SRELMVSRGQTVEILDQLyekNRDWYLIRTLaq-dnATPIEGLVPASCIRV 1121 purple urchin
XP_002424753 1615 EMTWVIGDHVAAPgSQELTVHKGQQVEVLDVNv-sSPDWCLVRMStsgsvDSPPEGLVPLSILKQ 1678 human body louse
XP_001234055 1638 ELTVVLQDFTAGH-SSELSIQVGQTVELLERPs-eRPGWCLVRTTe---rSPPQEGLVPSSALCI 1697 chicken

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