1ABO,3EG1,1OPL,2FO0


Conserved Protein Domain Family
SH3_Abl

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cd11850: SH3_Abl 
Click on image for an interactive view with Cn3D
Src homology 3 domain of the Protein Tyrosine Kinase, Abelson kinase
Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) PTK that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212784
Aligned: 14 rows
Threshold Bit Score: 76.6823
Created: 31-May-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligandPTKc domain
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:SH3 domains bind proline-rich ligands, preferentially to PxxP motifs.
  • Structure:1ABO; Mus musculus Abl tyrosine kinase SH3 domain binds 3bp-1 synthetic peptide; contacts at 4A.
  • Citation:PMID 7664083
  • Structure:3EG1; Human Abl tyrosine kinase mutant SH3 domain binds high-affinity peptide ligand (apsysppppp); contacts at 4A.
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #  ### #              #   ##                        # # ##   
1ABO_A          6 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKn--------------GQGWVPSNYITP 59   house mouse
3EG1_A          7 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKn--------------GQGWVPSQYITP 60   human
1OPL_A         84 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKn--------------GQGWVPSNYITP 137  human
2FO0_A         42 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKn--------------GQGWVPSNYITP 95   human
P00522        191 LFVALYDFQAGGENQLSLKKGEQVRILSYNKSGEWCEAHSDs-------------gNVGWVPSNYVTP 245  fruit fly
P03949        119 LFVALYDFHGVGEEQLSLRKGDQVRILGYNKNNEWCEARLYstrknda-snqrrlgEIGWVPSNFIAP 185  nematode
XP_002408731   16 LFVALYDFQSGGENQLSLKKGEQVKVVSYNRTGEWCEAQGRs-------------gQVGWVPSNYVTP 70   black-legged tick
NP_001084399  100 LFLALYDFVASGDNTLSITKGEKLRVLCYNQNGEWCEVLSKn--------------GQGWVPSNYITP 153  African clawed frog
AAL50110       88 LFVVLYDFNGGVENQLTVRKGDHVRILGYNKGGEWCEAKKLkn------------gKTGWVPVTYVTP 143  purple urchin
XP_002124117   11 FFVVLYPIESAGRNQLSLRKGCQLRVLRYNGTEEWCEAKVLstgdpsdnakcavvgSVGWVPSNYITP 78   Ciona intestinalis

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