3JV3,1UDL


Conserved Protein Domain Family
SH3_Intersectin_5

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cd11840: SH3_Intersectin_5 
Click on image for an interactive view with Cn3D
Fifth Src homology 3 domain (or SH3E) of Intersectin
Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212774
Aligned: 9 rows
Threshold Bit Score: 104.035
Created: 6-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #  #   #                 ##            # ##   
3JV3_A          4 QVIGMYDYTAQNDDELAFSKGQIINVLNKedPDWWKGEVSGQVGLFPSNYVKL 56   house mouse
1UDL_A         36 QVIAMYDYAANNEDELSFSKGQLINVMNKddPDWWQGEINGVTGLFPSNYVKM 88   human
XP_002408358   41 QVRALFPFVAQHEDELSFQKGQVVTVLSKedPSWWKGELGGHVGLFPSNYVEP 93   black-legged tick
XP_003247350 1067 KVIALFPFNAVHNDELTFQKDEIITLVSKdeQAWWRGELNGKTGLFPSNYVAP 1119 pea aphid
XP_002424588 1053 KVIAMFPYKALNDDELTFEKDDIITVISKdeATWWKGELRGSIGLFPCNYVTP 1105 human body louse
EFX81424     1209 QVVALFPYTAQNEDEMSFLQGDVLIIIDRedPAWWRGELKGQTGLFPSNYVEV 1261 common water flea
7298751      1029 KVIALYPYKAQNDDELSFDKDDIISVLGRdePEWWRGELNGLSGLFPSNYVGP 1081 fruit fly
XP_001203555   57 QVITIYQYAQQNEDELSFQKGMVINVLSKedPDWWRGELNGSEGVFPSNYVQE 109  purple urchin
XP_002168590 1020 QVLAVFSYTAQNEDELTFCKGSMINVLSKd-GEWWKGELDGQTGVFPYNYVQE 1071 green hydra

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