1J3T


Conserved Protein Domain Family
SH3_Intersectin_2

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cd11837: SH3_Intersectin_2 
Click on image for an interactive view with Cn3D
Second Src homology 3 domain (or SH3B) of Intersectin
Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212771
Aligned: 14 rows
Threshold Bit Score: 83.9544
Created: 3-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #  #    #                ##              # ##   
1J3T_A         12 KAQALCSWTAKkd-nHLNFSKHDIITVLEQqENWWFGEVHg--GRGWFPKSYVKI 63   human
EFZ18542      937 QVTALFPYRPTme-qHLSFEKGETINVSEQqDDWWYGSASt-gNNGWFPKSYVKE 989  red fire ant
XP_002123219  872 RYRAIYPWIAKke-nHLSFDKDDIIAVSEHqDMWWFGHCKg--KSGWFPKSYVKE 923  Ciona intestinalis
EFX81424      965 KAEAIYVWQGKkd-nHLSFNKGDVILVREQqDLWWFGQCNd--RSGWFPKSFVSL 1016 common water flea
XP_002168590  776 QAVALYLYRAKkd-dHLSFNKGDMISVQQQqDQWWFGECHg--ESGWFPKSYVKP 827  green hydra
XP_001607886  939 TATTLYQYRPTle-qHLSFGKGETVTIKEQqDVWCYGESSt-gTVGWFPKSYVKM 991  jewel wasp
XP_003374652  812 APPPHQQQQAT----TIQKLESDIIRIVEQqEMWWKGELEd-gREGWFPKSYVKI 861  Trichinella spiralis
CBJ29090       46 TVSATFPFFGDlaggQLSFQIGDNIKLLQKdELWSWGKLEksgEEGWFPHNYVQA 100  Ectocarpus siliculosus
CBJ27191      110 TVTASYPFRGEeslqQLSFAVGDEIRVKQKeDMWSWGVLVrggNEGWFPHNYVGT 164  Ectocarpus siliculosus
ADY40165      788 VAIAQYQWKARne-sELNFSKGERIEILEQlEMRWKGRSRn-gAVGWFPKSYVKM 840  pig roundworm

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