2D1X,2RPN


Conserved Protein Domain Family
SH3_Cortactin_like

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cd11819: SH3_Cortactin_like 
Click on image for an interactive view with Cn3D
Src homology 3 domain of Cortactin and related proteins
This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212753
Aligned: 12 rows
Threshold Bit Score: 80.4351
Created: 31-May-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Structure:2D1X; Human Cortactin SH3 domain binds Amap1 peptide; contacts at 4A.
  • Structure:2RPN; Saccharomyces cerevisiae Abp1p SH3 domain binds Ark1 peptide; contacts at 4A.
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #  #  ##                 ##            # # ##   
2D1X_A        12 TAVALYDYQAAGdDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYVEL 64  human
2RPN_A         3 WATAEYDYDAAEdNELTFVENDKIINIEFVDDDWWLGELEkdGSKGLFPSNYVSL 57  baker's yeast
7363175      729 PAIVIYDYSPEEeNEIELVENEQIQILEFVDDGWWLGENSk-GQQGLFPSNYVEI 782 fission yeast
CAC38778     424 RAKAVYDYQATGeDEISFDPDDIIENIEQVDEGWWIGDFN--GNRGLFPANYVEL 476 Suberites domuncula
AAW27083     158 TAIAMYDYEAAEdDELTFSVGEKIIEIEKIDEGWWKGVCR--NKIGLFPANYVTL 210 Schistosoma japonicum
Q6GM14       321 CARALYDYQAADdTEISFDPDDVIIQIEMIDDGWWRGVAPs-GHFGMFPANYVEL 374 African clawed frog
XP_002116527 413 HAKALYDYQADAaDEISFQPGDIIYDIEMIDEGWWIGYTSn-SDKGMFPANYVEL 466 Trichoplax adhaerens
EGD82924     274 RARALYDYQADEeGELTFDPGDIITDIEQIDEGWWQGACN--GQFGLFPANYVEL 326 Salpingoeca sp. ATCC50818
XP_570077    525 RAKVLYDYDAAEdNELSLREDDIITQIEQLDEGWWSGTNAd-GQSGLFPANYCEL 578 Cryptococcus neoformans var. neoformans ...
CAX73981     454 QAVCLYDYVANEnDELSFRVGDHIFGIEQIDEGWWLGRDAs-GQIGLFPANYVKL 507 Schistosoma japonicum
XP_002910819 579 VAVVLYEYEATEdNEMNLVEGEYIEQIEEIDEGWWTGVGAg-GKTGLFPANYVEI 632 Coprinopsis cinerea okayama7#130
EGF76523     378 NAKALYDYSPEEsNEIPFLEEELITHVIQVDEGWWEGTNAq-GQRGLFPSNYVEL 431 Batrachochytrium dendrobatidis JAM81

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