1X43


Conserved Protein Domain Family
SH3_Endophilin_B

?
cd11802: SH3_Endophilin_B 
Click on image for an interactive view with Cn3D
Src homology 3 domain of Endophilin-B
Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
?
PSSM-Id: 212736
Aligned: 16 rows
Threshold Bit Score: 76.9429
Created: 31-May-2011
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1             # #  #   #                    ##            # ##
1X43_A        19 KARVLYDYDAANstELSLLADEVITVFSVvg-mdSDWLMGERGnQKGKVPITY 70  house mouse
XP_002109451 294 RAKVLYDYDAANasELSLLADEIITVLAVpg-mdEDWIMAERGnQRGKVPTTY 345 Trichoplax adhaerens
XP_002408729 281 RARVLYDYDAHDnsELSLMADEVIIISQTds-ldPDWMIGERGlQKGKVPIAY 332 black-legged tick
EFN60226     287 RARVLCNYDARDssELSVMQDEVIGIYEIpd--dEDYFMGIRGnQRGKVPKVY 337 Camponotus floridanus
EFA03407     329 KARVIYDYDGQDttELSLMANEIIMVKELsdkpnEDYLYGERGhQKGKVPRAY 381 red flour beetle
XP_623588    340 LARVLCDFSASNseELSVVQNEVITVIEIpg--dEDYVMGISGsKRGKIPVAY 390 honey bee
NP_741756    311 QAKVIMDYDAVLpqEISVTQNDILIVYRLpg-mdAEYVMAEKGgKRGKLPVSY 362 nematode
XP_002430138 281 KALVKSNYNAKDstELSLLEDEVIIVRELsd-tdSDFFLGERGsQKGKVPKSI 332 human body louse
EFX69735     276 KARVICDYDSQDitELSLIAGEVIDVVSTip-nePDYVQAERGhQAGKIPSSY 327 common water flea
AAN71360     315 RARVLCSYDAKDhtELNLSANEVIFVTECsp-vnEDYMYGKQGlLKGLVPRAF 366 fruit fly

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap