Conserved Protein Domain Family
SH3_DNMBP_N4

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cd11797: SH3_DNMBP_N4 
Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba
DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP bind the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212731
Aligned: 4 rows
Threshold Bit Score: 102.502
Created: 31-May-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
peptide ligand
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #  #   #                 ##            # ##
Q6XZF7        247 YGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRF 296  human
XP_002937226  251 FAVALYKFEAMEQRELDFEVGDRIRIIKTLEDGWLEGELYGKRGIFPHRF 300  western clawed frog
CAG12597      272 YVVALYEFRAMEPGELDFDMGDRIHVISTLEDGWLEGELQGRRGIFPHRF 321  spotted green pufferfish
XP_421697     245 YGVALYQFQALESEELDFDVGDRIRIVGILEDGWLEGELRGKRGIFPHRF 294  chicken

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