1X6B


Conserved Protein Domain Family
SH3_ephexin1_like

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cd11793: SH3_ephexin1_like 
Click on image for an interactive view with Cn3D
Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors
Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212727
Aligned: 14 rows
Threshold Bit Score: 86.6209
Created: 31-May-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #  #   #                 ##              # ##   
1X6B_A         19 QVEITKAFFAKqADEVTLQQADVVLVLQQe-DGWLYGERLrDGETGWFPEDFARF 72   human
XP_002432070  933 QVIALYEFTPVqPDELNLCIGDVVNVLKKmsDGWYQGERLrDGARGWFPQNHTQE 987  human body louse
XP_001631658  370 QVQAIHNYTPQqPDELALHEGDVINVLRKlpDGWYHGERLcDGVQGWFPANHTEN 424  starlet sea anemone
NP_001189123 1944 QVVAKHSYESDePDVLQLELGDVVNVSRKlpDGWYQGERIrDGAVGWFPGSYTEE 1998 fruit fly
XP_002169315  635 QVQVKRAYQAQqSDELTLIEGDVLKVLRKtpDGWCEGMRLrDDEKGWFPIDNTYE 689  green hydra
XP_002401602 1283 QVQCRHAYIPEqPDELALQESDVVNVFRKmsDGWYEGERIrDGVRGWFPSAHTVE 1337 black-legged tick
NP_494706    1021 QALVVHAYQPSqADELQLNIGDSLNILRKmpDGWLYGERAgDGLGGWFPSSYVQA 1075 nematode
CAM56671      434 QVQCVDRYVAQqADELSLEVSEVINVLRKtnEGWYEGIRLfDGKKGWFPAENTLE 488  zebrafish
EFX87681      391 QVQAIHPYVATqPDELSLEVADVVNVLRKmaDGWYQGERMrDDQRGWFPGNYTVE 445  common water flea
XP_003227280  891 QVQCTEAYTATqADELSLEPTDIVNVLRKtnEGWYEGVRLaDGKKGWFPSRYVQE 945  green anole

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