1MUZ,1MV3,1BB9


Conserved Protein Domain Family
SH3_Amphiphysin

?
cd11790: SH3_Amphiphysin 
Click on image for an interactive view with Cn3D
Src Homology 3 domain of Amphiphysin and related domains
Amphiphysins function primarily in endocytosis and other membrane remodeling events. They exist in several isoforms and mammals possess two amphiphysin proteins from distinct genes. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin, and synaptojanin. They function in synaptic vesicle endocytosis. Human autoantibodies to amphiphysin I hinder GABAergic signaling and contribute to the pathogenesis of paraneoplastic stiff-person syndrome. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. Mutations in Bin1 are associated with autosomal recessive centronuclear myopathy. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. The SH3 domain of amphiphysins bind proline-rich motifs present in binding partners such as dynamin, synaptojanin, and nsP3. It also belongs to a subset of SH3 domains that bind ubiquitin in a site that overlaps with the peptide binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
?
PSSM-Id: 212724
Aligned: 14 rows
Threshold Bit Score: 105.487
Created: 31-May-2011
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Structure:1MV3: Human Bin1+12A splice variant SH3 domain binds intramolecular proline-rich sequence; contacts at 4A.
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                   #######                   # ####                      # ##    
1MUZ_A         9 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPE-EQDEGWLMGVKEsdwnqhkklekCRGVFPENFTERV 80  human
1MV3_A       141 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPE-EQDEGWLMGVKEsdwnqhkklekCRGVFPENFTERV 212 human
EFV62395     400 VLYKVRASHRYTAEDTDELSFEAGEVILVVPYENPE-DQDEGWLMGVLEtt--------gQRGVFPVNFTKPL 463 Trichinella spiralis
XP_002434594 602 VLYRVRATYKYTAEDVDELNFESGEIIRVIEYDDPE-EQEEGWLMGIKEss--------gEKGLFPANFTRPI 665 black-legged tick
NP_523717    539 VLYRVKATYGYAKEDVDELSFEIGDLIRVIEYDDPE-DQEEGWLMGQKEgt--------nEKGLFPANFTRPI 602 fruit fly
XP_001626424 583 VLYKVRATHKYNAEDDDELSFEKDDIIHVIAFDDPDeEQDEGWLLGILDst--------rIKGVFPANFTKVI 647 starlet sea anemone
XP_782507    365 VLYRAKATHDYQPRDSDELTLAKGEIVCVVPFEDPE-DQDEGWLMGYKEdn--------gDRGVFPENFTSKF 428 purple urchin
XP_002736694 393 VLYKVRATHKYESMDTDELSFEKGEIIFVVPFDDPD-DQDDGWLMGTRSsd--------gARGVFPENFTIKI 456 Saccoglossus kowalevskii
EFX80458     322 VLYRVRATYKYQAEDEDELSLEVGDTVQVIEYEDPE-EQEEGWLMGIKEat--------gRQGLFPANFTRPI 385 common water flea
XP_003384910 427 VLFKVTSRHPYTGEDEDELTFDKGVVIHVIPYDNPD-DEEDGWLMGFIPgt--------tARGIFPENFTERL 490 Amphimedon queenslandica

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap