2YMA


Conserved Protein Domain Family
Yos9_DD

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cd11745: Yos9_DD 
Click on image for an interactive view with Cn3D
C-terminal dimerization domain (DD) of Saccharomyces cerevisiae Yos9 and related proteins
Yos9 participates in the ER-associated protein degradation pathway that targets misfolded proteins for proteolysis. Yos9 is a component of the reductase degradation (HRD) ubiquitin-ligase complex, specifically part of the luminal submodule of the ligase. Yos9 scans proteins for specific oligosaccharide modifications, which are critical determinants of degradation signal. It has been shown to be involved in the degradation of glycosylated proteins and various nonglycosylated proteins. Yos9 functions as a homodimer where this domain is responsible for the self-association; it has an alphabeta-roll domain architecture, and is found at the C-terminus of the protein. The N-terminal portion of Yos9 which includes an MRH domain is required for binding to Hrd3p, another component of the HRD complex. The DD domain does not appear to be directly binding Hrd3p.
Statistics
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PSSM-Id: 213372
Aligned: 13 rows
Threshold Bit Score: 138.575
Created: 6-Sep-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
homodimer
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:homodimer interface [polypeptide binding site]
Evidence:
  • Structure:2YMA: Saccharomyces cerevisiae Yos9 DD domain homodimer interface, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
2YMA_A     14 YEPIFLGsGIYFLRPfn--------tdERDKLMVtdnams------nwdeiTETYYQKFGNAINKMLSLRlvSLPNGHIl 79   baker's yeast
EDO16657  273 YNPLFLGyGFYLLNPkissys-hdqfpSRSVLMYsgisnie----qnvdaiYRELYQRAGKAMTRMMYLKflTLPDGNPy 347  Vanderwaltozyma p...
CCE61463  276 YDPTFLGySFYLLTPksavi--nseikNRNLLMYtgavsky----asldelYAVLYQKASNAVSRMMFMKylLLPDNKPf 349  Tetrapisispora ph...
CCF59534  268 YSPKFLGhGVYLLEPar--------enEMWALMYsddinn-----edngkvSRHVYENFGNAINKLIAQGllKAPDGSPm 334  Kazachstania afri...
CCE93023  254 YKPTFLGnEVYLLEPydki-----sshNRTALMFtgnmss------hgsllEQKLDIKLANAISRMVFQHllLLPDGLPy 322  Torulaspora delbr...
CCC67637  259 YDPIFLGrSIYLLRPnal------gnnKKYKLMYsgplpsg----eswelpSEHLYKTFNTIFGRMMDLHllKDSDGSIa 328  Naumovozyma caste...
Q6FV52    260 YDVSFVAnQVYFLLPmnn------snvDRALLMYtgnated---glemdpfPMEIYKKFIDVMNKMLGLGllSPPDGKPf 330  Candida glabrata ...
CAR29611  258 YEPIFVGsDFYLLDPqtgs-----tddQRKVLLYsgkhkvk----dgfvesDAELYENIGSAFSRMLYQQl-LMPPGEPa 327  Zygosaccharomyces...
CCD22706  264 FDPIFLGqSIYLLAPngk------nheKKANLMYteqlndp----siwdspTEVLYKAFTIAFSRVITLGllHFPDGSKl 333  Naumovozyma daire...
Q99220    277 YEPIFLGsGIYFLRPfn--------tdERDKLMVtdnams------nwdeiTETYYQKFGNAINKMLSLRlvSLPNGHIl 342  Saccharomyces cer...
Q756T2    254 YKPTFLGhGFYHLAPhanl----thkeTTAMLMYhqqpipgn--eeddgtmDSAFIKHSTMAYMQLLEMGllNGPDGLPf 327  Ashbya gossypii A...
CAR23661  254 YSPTFLGsGFYFLQErsnpkftgmrnnAASKLLYieelklsg-edaeldpsEKLFFDRAANAFQEIILKNlfPKSQNLPl 332  Lachancea thermot...
Q6CNH1    256 YSATVLDhGIYLLKPkns-------akDRRQLMYhaaepldsqttlfeltvEERFIGDFISSLKKLIGSDfiQSPTGKSi 328  Kluyveromyces lac...
Feature 1            # #              # # #       # # #           ##### 
2YMA_A     80 q-pGDSCVWLAEVVDMKDRFQTTLSLNILNSq--RAEIFFNktftfnedngNFLSYKI 134  baker's yeast
EDO16657  348 m-hGDRFTWISDVVDLNGKFITRMIFTIDEKd--VAEIKLDytlef-knfgNFVSYQR 401  Vanderwaltozyma polyspora DSM 70294
CCE61463  350 k-eGDEFTWVADLVNMEGNRVYTLTFHINERl--LVDIQKTegvqf-peigNFISYKR 403  Tetrapisispora phaffii CBS 4417
CCF59534  335 q-sGDQYAWISDIFDLEGNRVQKLRFAIADSr--QGELVIRnnlts-pldsNFEYYHK 388  Kazachstania africana CBS 2517
CCE93023  323 n-vDDKFAWMSEVLDSKGNFVTMVQFNLSST---LADIDINssief-kgpgNFVFFER 375  Torulaspora delbrueckii
CCC67637  329 e-iGDAFEWIADIVDTDGKFLSRFKVKESPNd--TLELLLFkslhs-gvdgNFISFQK 382  Naumovozyma castellii CBS 4309
Q6FV52    331 d-vHDSYQWIGDIVDMHGNYLNRLRLDVDVNm--EATLIIDksinf-tgpnNFQWYFR 384  Candida glabrata CBS 138
CAR29611  328 yetGDEISWISDVVDLRGNYLTRLQFNLSSNa--LADISLSsgief-pesgNLLYHRQ 382  Zygosaccharomyces rouxii CBS 732
CCD22706  334 e-nGDTFSWIAEIVDITGKPLSKIKVSTKHDg--SMELLIYkdlpl-ldvgNFEYYSK 387  Naumovozyma dairenensis CBS 421
Q99220    343 q-pGDSCVWLAEVVDMKDRFQTTLSLNILNSq--RAEIFFNktftfnedngNFLSYKI 397  Saccharomyces cerevisiae S288c
Q756T2    328 s-eEGNFTVYAKVIGFDGGLITVTRFQISHGe-vIIDHVVPevled-meqgNSEDYEQ 382  Ashbya gossypii ATCC 10895
CAR23661  333 t-iEDAFVWFVEVVDKRGDHLCILRVGVESG---IASISFDqsge---sglNFRGNAF 383  Lachancea thermotolerans CBS 6340
Q6CNH1    329 k-pGDLFLWRAPVVDETGNLLFLIDLELNSAseaIGKVNNDasllnelpihNMVYFDS 385  Kluyveromyces lactis NRRL Y-1140

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