3A1A,2PVC


Conserved Protein Domain Family
ADDz_Dnmt3

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cd11725: ADDz_Dnmt3 
Click on image for an interactive view with Cn3D
ADDz domain found in DNA (cytosine-5) methyltransferases (C5-MTases) 3 (Dnmt3)
Dnmt3 is a de novo DNA methyltransferase family that includes two active enzymes Dnmt3a and -3b and one regulatory factor Dnmt3l. The ADDz domain of Dnmt3 is located in the C-terminal region of Dnmt3, which is an active catalytic domain in Dnmt3a and -b, but lacks some residues for enzymatic activity in Dnmt3l. DNA methylation is an important epigenetic mechanism involved in diverse biological processes such as embryonic development, gene expression, and genomic imprinting. The ADDz_Dnmt3 domain is a PHD-like zinc finger motif that contains two parts, a C2-C2 and a PHD-like zinc finger. PHD zinc finger domains have been identified in more than 40 proteins that are mainly involved in chromatin mediated transcriptional control; the classical PHD zinc finger has a C4-H-C3 motif that spans about 50-80 amino acids. In ADDz, the conserved histidine residue of the PHD finger is replaced by a cysteine, and an additional zinc finger C2-C2 like motif is located about twenty residues upstream of the C4-C-C3 motif.
Statistics
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PSSM-Id: 277251
Aligned: 25 rows
Threshold Bit Score: 77.8142
Created: 16-Mar-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide bindingZn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Comment:The tail of histone H3 binds to the cysteine-rich domain of ADDz_Dnmt3l to stimulate the de novo DNA methylation activity of Dnmt3a
  • Structure:2PVC; the human Dnmt3l interfaces with the tail of histone H3, contacts at 4.0 A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
3A1A_A         20 IEDICISCGslnv---------tleHPLFVGg---------MCQNCKNCFLecayqy----------------------d 59   human
2PVC_A         49 IEDICICCGslqv---------htqHPLFEGg---------ICAPCKDKFLdalfly----------------------d 88   human
EKC24789      405 LSEICLSCDdienv-------evedHPLFFGg---------LCKSCKEEWKesihiy----------------------d 446  Pacific oyster
ESO93262      510 IKDICIACAdssaa-------ivcqHPLFKGg---------VCKKCKVDILetiyal----------------------d 551  owl limpet
ESN99160      274 EKGACLSCRanig---------aynHPFLLGk---------LCITCKNRLIdnifvf----------------------d 313  Helobdella ro...
XP_005705327   39 HLVPCAICLslvpw------nfsfdHPFVAShc------irLCRNCLESIEkrrmeladkg--------------llfst 92   Galdieria sul...
XP_005851099 1171 RAGRCHFCCleapd-------palrHPEAAFaa------lrLCGDCHATLEpdswrtphwgravlllagrrgevwrsqdp 1237 Chlorella var...
EEY54092      135 SKMICVLCRmqrkpd----apeypkHPFVLKvrdgkgevvhICKVCLQRVLqqrvqnpp------------------vvk 192  Phytophthora ...
AHW76844      368 INDICIACCcdhnsaadtingqkifHPLFEGl---------LCKQCRETIKttmyap----------------------g 416  two-spotted s...
KDR21442      207 IEKLCLRCRsskvq-------ivgeHPYFKGs---------LCKICMETVKehiftf----------------------g 248  Zootermopsis ...
Feature 1                      ##      ####            #                     #              
3A1A_A         60 ddgyqSYCTICCGGR------EVLMCGnnNCCRC-FCVECVDLLVGPGaaqaa-ikedpWNCYMCGHKGTYGLL 125  human
2PVC_A         89 ddgyqSYCSICCSGE------TLLICGnpDCTRC-YCFECVDSLVGPGtsgkv-hamsnWVCYLCLPSSRSGLL 154  human
EKC24789      447 ddqtnTFCVICSTGG------DLVVCEdvNCGKS-YCVECIKNYLSEGqlkki-kesqvWNCFLCTLYNKSTHG 512  Pacific oyster
ESO93262      552 edgvmAYCSICGHGG------TVFLCDkvGCNRV-YCVECIDEMAGSIiltei-eqkknWQCFMCTEFDIKSHG 617  owl limpet
ESN99160      314 tdgfnMFCVICGQAG------EVFLCDklGCNKV-FCCRCMTDILGKSqvhai-ksgemWTCFICDPTSHHLIG 379  Helobdella robusta
XP_005705327   93 rnayeLSCACCNNESqr--sqVFFTCV--GCTRS-YCKVCVTRILGEYavatglvqlqaWFCPLCVRFNVQAKE 161  Galdieria sulphuraria
XP_005851099 1238 adpgyQYCLMCGGAGvgc-teHLVMCA--DCQQCgFCTGCLWRFSGDDvaalm-rddapFTCLLCRPEPRLQLL 1307 Chlorella variabilis
EEY54092      193 kgdpdNYCGLCAQSAenlpvkSIKACTheICTRV-YCLPCIDKLIGRAqshkv-wrtnnWLCPNCSTDNDDASP 264  Phytophthora infest...
AHW76844      417 adnknSFCAICGQVG------KLAVCEgvKCHRV-FCFVCINLFVGPEaetei-lnaksWECFLCKEYNFPPES 482  two-spotted spider ...
KDR21442      249 adgihMHCAICSNAG------EVFVCSnpQCCKV-YCHVCIDLLASEGaknwi-rekepWLCFLCDDPLSSMHG 314  Zootermopsis nevade...

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